1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtaaaccagcggcgcaaaaatgcccacgtttttagcttgttatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGCGCCGAAGAAGCCAAG
species | Physcomitrella patens |
transcript | PP1S2_16V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208391390|gb|DC933567.1|DC933567
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208389935|gb|DC937766.1|DC937766
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208376484|gb|DC922515.1|DC922515
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: GGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|162236728|gb|FC413407.1|FC413407
genomic: GGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: GACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67719943|gb|BJ970202.1|BJ970202
genomic: GACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|18361523|gb|BJ193589.1|BJ193589
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|162192347|gb|FC371642.1|FC371642
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208382233|gb|DC914852.1|DC914852
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|162279719|gb|FC455627.1|FC455627
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67728248|gb|BJ978507.1|BJ978507
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|162279720|gb|FC455628.1|FC455628
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208368148|gb|DC947708.1|DC947708
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|18365612|gb|BJ197689.1|BJ197689
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|162194794|gb|FC371641.1|FC371641
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67695781|gb|BJ956014.1|BJ956014
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67573065|gb|BJ945889.1|BJ945889
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208382671|gb|DC923257.1|DC923257
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CGTANTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|162236729|gb|FC413408.1|FC413408
genomic: CGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: ACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|18361547|gb|BJ193613.1|BJ193613
genomic: ACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|162190584|gb|FC366222.1|FC366222
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67572408|gb|BJ945232.1|BJ945232
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67728201|gb|BJ978460.1|BJ978460
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67719989|gb|BJ970248.1|BJ970248
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|67696449|gb|BJ956682.1|BJ956682
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208400408|gb|DC908635.1|DC908635
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAEST: gi|208390785|gb|DC945858.1|DC945858
genomic: CATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
EST: TGATGGCAAGGTNCGTACTGACNAGTGNTACCCAGCAGGGTTCATGG ATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
genomic: TGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaac ... cctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACA
agtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGCGCCGAAGAAGCCAAG
ctctcatctcatcctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaaccagcggcgcaaaaatgcccacgtttttagcttgttatcaatgtctcgtgaatgatatagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctagATGTGATATCCATTGCCAAGACGAACGAGAACTTCCGGTTGTTGTATGACAACAAAGGTCGTTTCACCCTGCACAACATCAGCGCCGAAGAAGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC