1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcccgtactgtttgcacgcgtattttgtcagggtattataggatctgtatttgatgtacttggtaaatcccgcatcttatcgctgtagttgtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCTGTATTCGACACTCCTGAAGATGTGCCTGAGGAT
species | Physcomitrella patens |
transcript | PP1S29_256V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACGGGAGNATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|162171618|gb|FC347559.1|FC347559
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|19777824|gb|BQ039232.1|BQ039232
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|67719586|gb|BJ969845.1|BJ969845
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|100368841|gb|BY984912.1|BY984912
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACGTCTTCAAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCCGGAGGATTACTCGAGATEST: gi|67718262|gb|BJ968521.1|BJ968521
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACC-GGAGGATTACTCGAGAT
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|162176349|gb|FC353534.1|FC353534
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|208359693|gb|DC930283.1|DC930283
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCNAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|162167232|gb|FC342797.1|FC342797
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|19789330|gb|BQ041244.1|BQ041244
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: TCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|100386758|gb|BY970299.1|BY970299
genomic: TCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGAT-ACTCGAGATTGCCAA-GTGTATCCCTTAGATGCEST: gi|162169525|gb|FC346089.1|FC346089
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|162169758|gb|FC345295.1|FC345295
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|100418707|gb|BY975701.1|BY975701
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAA-GTGTATCCCTTAGATGCEST: gi|162176594|gb|FC353063.1|FC353063
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|162181164|gb|FC357609.1|FC357609
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|67718833|gb|BJ969092.1|BJ969092
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|100384688|gb|BY950678.1|BY950678
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|100429370|gb|BY978077.1|BY978077
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|100403476|gb|BY991219.1|BY991219
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCEST: gi|162241271|gb|FC416902.1|FC416902
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
EST: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCA GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
genomic: AACATCTTCGAGACCAGTCTCAGGAGAGGCAAGTTCGACGAGTCCCGGCAgtaagtgcct ... gtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGC
tgtatttgatgtacttggtaaatcccgcatcttatcgctgtagttgtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCTGTATTCGACACTCCTGAAGATGTGCCTGAGGAT
atttgat putative branch site (score: 11)
ttgtttcctt putative PPT
atcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccgtactgtttgcacgcgtattttgtcagggtattataggatctgtatttgatgtacttggtaaatcccgcatcttatcgctgtagttgtttccttagGCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCTGTATTCGACACTCCTGAAGATGTGCCTGAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT