1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctatgttgtgcaagtcggctgtcacatggggcctaattttgtctgtaattacggccacctctcatttatggtatgatgtgtgatctcatgcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG
species | Physcomitrella patens |
transcript | PP1S295_30V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|100414507|gb|BY992807.1|BY992807
genomic: GGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|162260165|gb|FC436300.1|FC436300
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208385598|gb|DC937143.1|DC937143
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208367886|gb|DC950953.1|DC950953
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GTGCAGGCNTTATCTCCTGAG ATATTGCAACATGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|162278111|gb|FC453930.1|FC453930
genomic: GTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208377957|gb|DC910961.1|DC910961
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208375008|gb|DC956404.1|DC956404
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: TGCAGGCATTATCTCCTGAG ATATTGCAACACCGTTCTTTTGGATCTGCCCGGGCATAGTATTNTTNCACGEST: gi|208374777|gb|DC932046.1|DC932046
genomic: TGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACA-CGTTCTTTTGGATCTG-CCGGGCATAGTATTCTT-CACG
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|162278110|gb|FC453929.1|FC453929
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208349948|gb|DC913656.1|DC913656
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208390738|gb|DC937894.1|DC937894
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACATGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|100364489|gb|BY984629.1|BY984629
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|162260166|gb|FC436301.1|FC436301
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|18361916|gb|BJ193983.1|BJ193983
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208386340|gb|DC932836.1|DC932836
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACAEST: gi|208387111|gb|DC941283.1|DC941283
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
EST: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAG ATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
genomic: GCGCTTCGGTTTTCTGCTTCCGCGAGGATGTGCAGGCATTATCTCCTGAGgcatgtgttg ... gcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACA
gtaattacggccacctctcatttatggtatgatgtgtgatctcatgcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG
tcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatgttgtgcaagtcggctgtcacatggggcctaattttgtctgtaattacggccacctctcatttatggtatgatgtgtgatctcatgcgaatccagATATTGCAACACGTTCTTTTGGATCTGCCGGGCATAGTATTCTTCACGACATATACTCTTCTAGTGTTGTTCTGGGCCGAAATCTATCATCAG
- - - - - - - - - - - -cacatgg