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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcagattgtctctgcatcggctcaagcggcctcattattactcacgttgagttgttctgtaggttcgtgacagtgttgagggtttctggtattatattctccctgaaaatcttgtaacttgtggtgtgtgtgtgtgtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACATTTCCGGTAGGCAAGTCATGCCTCGCTTGGGGATGTTGCGCCTTGGACT

Basic information

species Physcomitrella patens
transcript PP1S292_39V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208398843|gb|DC920791.1|DC920791
EST:     GCCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|67695892|gb|BJ956125.1|BJ956125
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162241027|gb|FC416658.1|FC416658
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAATACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|67692929|gb|BJ953162.1|BJ953162
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|208356563|gb|DC922353.1|DC922353
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATNTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|37827016|gb|BJ585028.1|BJ585028
EST:     CCCACCCAAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: CCCACCC-AACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162175139|gb|FC351181.1|FC351181
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAATACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162256348|gb|FC432358.1|FC432358
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|208384383|gb|DC928134.1|DC928134
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162255228|gb|FC431538.1|FC431538
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|67579180|gb|BJ951325.1|BJ951325
EST:     TCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: TCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|208375198|gb|DC945348.1|DC945348
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162261073|gb|FC437454.1|FC437454
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|37852856|gb|BJ610864.1|BJ610864
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162250706|gb|FC426555.1|FC426555
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAATACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162250705|gb|FC426554.1|FC426554
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTTTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAATACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|67695026|gb|BJ955259.1|BJ955259
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCNTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|208396408|gb|DC920074.1|DC920074
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162261074|gb|FC437455.1|FC437455
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|67692416|gb|BJ952649.1|BJ952649
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162205854|gb|FC381092.1|FC381092
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTTTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAATACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|162205855|gb|FC381093.1|FC381093
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAATACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|208399367|gb|DC924797.1|DC924797
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
EST: gi|208399137|gb|DC916534.1|DC916534
EST:     ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTG                         ATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA
genomic: ACCCACCCAACCCTGGCCCCACTCCTCCTTCTCCACCACCTCCTGAAGTGgtgagcagat ... gtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatattctccctgaaaatcttgtaacttgtggtgtgtgtgtgtgtgtgaccagATTTGTGACAAATGGCGTACTTGTCCTGCGGAGAACACATGCTGCTGCACATTTCCGGTAGGCAAGTCATGCCTCGCTTGGGGATGTTGCGCCTTGGACT
                     ttgtaac  putative branch site (score: 2)
               aaaatctt  TA-rich tract