1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccaccgtgtatggttagagattggattagtgagtgacttgcagggatgtctcctttagacccatggacaaaatcttatttatgttgatattatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTTGCAGCCATCCACTGTACCGTGAGTCTGAACTTATTGAGGATAAATACC
species | Physcomitrella patens |
transcript | PP1S28_399V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100367664|gb|BY984756.1|BY984756
genomic: TTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100448697|gb|CJ972996.1|CJ972996
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCCTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100399390|gb|BY954346.1|BY954346
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|162217577|gb|FC393981.1|FC393981
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208365909|gb|DC951088.1|DC951088
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: TCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208353466|gb|DC938701.1|DC938701
genomic: TCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208397465|gb|DC908299.1|DC908299
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208367267|gb|DC939825.1|DC939825
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100451948|gb|CJ975023.1|CJ975023
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208390214|gb|DC941993.1|DC941993
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208386359|gb|DC932855.1|DC932855
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208358240|gb|DC930681.1|DC930681
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|19784534|gb|BQ040190.1|BQ040190
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100434315|gb|BY979047.1|BY979047
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208377735|gb|DC940847.1|DC940847
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|18363121|gb|BJ195193.1|BJ195193
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCEST: gi|18329541|gb|BJ161547.1|BJ161547
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGC
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208374313|gb|DC940670.1|DC940670
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|18331218|gb|BJ163227.1|BJ163227
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|162217722|gb|FC393814.1|FC393814
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100365672|gb|BY948358.1|BY948358
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100368808|gb|BY984900.1|BY984900
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100424955|gb|BY976899.1|BY976899
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208357909|gb|DC934828.1|DC934828
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208376707|gb|DC902916.1|DC902916
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|162215822|gb|FC390887.1|FC390887
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208345096|gb|DC909458.1|DC909458
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208375497|gb|DC937012.1|DC937012
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|208389975|gb|DC938030.1|DC938030
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|162192625|gb|FC370672.1|FC370672
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100388888|gb|BY988764.1|BY988764
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTEST: gi|100420599|gb|BY976088.1|BY976088
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
EST: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAG AAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
genomic: GTGCGTTCAGTGTCTTTCTTTTCAATTCCAAGCATGAGCTCCTGTTGCAGgtattgagct ... tatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGT
atgtctcctttagacccatggacaaaatcttatttatgttgatattatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTTGCAGCCATCCACTGTACCGTGAGTCTGAACTTATTGAGGATAAATACC
tgttgat putative branch site (score: 19)
acaaaatcttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaccgtgtatggttagagattggattagtgagtgacttgcagggatgtctcctttagacccatggacaaaatcttatttatgttgatattatatttcagAAACGTTCGGCTACGAAAGTGACCTTTCCACTTGTGTGGACCAACACTTGTTGCAGCCATCCACTGTACCGTGAGTCTGAACTTATTGAGGATAAATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT