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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatctggctcgaaaatagttcattctgctcttcagacgacgtggcctgaagaatgcaataagaattttacatatagttctcctaacacctgctcgtattcttgtgtggcagGACACTCGGAAGCAGTGTTATCAGTGCAATTTAGTCCAGATAGTACTAAGCTTGCTAGTGGGTCAGGTGATACTACTGTCCGATTCTGGGACATTTACAC

Basic information

species Physcomitrella patens
transcript PP1S28_215V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18325865|gb|BJ157863.1|BJ157863
EST:     GGCTATATTTCGAATCAAGCCTGTCACCCGTTGTTCTGCTAGCATACCTG                         GACACTCGGAAGCAGTGTTATCAGTGCAATTTAGTCCAGATAGTACTAAGC
genomic: GGCTATATTTCGAATCAAGCCTGTCACCCGTTGTTCTGCTAGCATACCTGgtgagaatct ... tgtgtggcagGACACTCGGAAGCAGTGTTATCAGTGCAATTTAGTCCAGATAGTACTAAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataagaattttacatatagttctcctaacacctgctcgtattcttgtgtggcagGACACTCGGAAGCAGTGTTATCAGTGCAATTTAGTCCAGATAGTACTAAGCTTGCTAGTGGGTCAGGTGATACTACTGTCCGATTCTGGGACATTTACAC
                       tcctaac  putative branch site (score: 1)
                                       tattctt  putative PPT
      aattttacatatagtt  TA-rich tract