Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttcgtcacgagttctatccatggcgcctccgcctgtgtcggatcttttcattctgggcatagttatcaataatgtgttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT

Basic information

species Physcomitrella patens
transcript PP1S28_131V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os08g02340.2 (Oryza sativa), 3'ss of exon 3
acttcgtcacgagttctatcca--tggcgcctccgcctgtgtcggatcttt-tcattctgggcatagttatcaataatgtgttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT---
  |  |  |    | | ||     ||     |  | |  || |  || | | |  |  |  |  | || |   | ||  ||| ||| ||     |  |  ||||||||| | ||||| |||||||| ||||||||||| || |||||||| || ||     ||    |    |||  ||   ||  |  ||  |||     |    
-gtgagctatacatacaatttgcttgttatttttgtc-atgacacatgtatgttttgttttgttttgtaacttacaa-atgt-cttggttttcctcttatcagGAGGAGGCGAAGGAGGAGAGCGACGATGACATGGGTTTCAGCTTGTTCGACTAAGCAGTCCACAGATG-TTAGCCAGTCCGCCT--ATGCTTTGCAAGACTAT

upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA03G42180.1 (Glycine max), 3'ss of exon 3
acttcgtcacgagttctatccatggcgcctccgcctgtgtcggatcttttcattctgg--gcatagttatcaataatgtg-----ttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAG----ATGATCATTTGTC-AATTAAACACGACGGATGAATATTTTTTCTCAT
   |   |    | |  |    | |  ||| |   ||| |  ||    | | || |||  || ||  | |   |||| ||      |  |||| || ||  |   |||| || ||  | |||||||| |||||||| ||||||||  ||||||||||||||    ||  ||| |  |    |||||      || |   ||  ||||     
--gtaaccctctggtgaaattgttgttcctgctattgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattct-ataggaagAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATTAGGGACATTCTCAATGATTTGGTTAAATTTTGTGGTTCTTTACCTTTTAAGG-

upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA03G42180.3 (Glycine max), 3'ss of exon 3
acttcgtcacgagttctatccatggcgcctccgcctgtgtcggatcttttcattctgg--gcatagttatcaataatgtg-----ttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAG----ATGATCATTTGTC-AATTAAACACGACGGATGAATATTTTTTCTCAT
   |   |    | |  |    | |  ||| |   ||| |  ||    | | || |||  || ||  | |   |||| ||      |  |||| || ||  |   |||| || ||  | |||||||| |||||||| ||||||||  ||||||||||||||    ||  ||| |  |    |||||      || |   ||  ||||     
--gtaaccctctggtgaaattgttgttcctgctattgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattct-atagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATTAGGGACATTCTCAATGATTTGGTTAAATTTTGTGGTTCTTTACCTTTT-----

upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv15s0048g02610.t01 (Vitis vinifera), 3'ss of exon 3
--acttcgtcacgagttctatccatggcgcctccgcctgtgtcggatcttttca--ttctgggcatagttatcaataatgtgttc--tttgtgg---cgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT--
  | ||| |   | ||| | |   | |    |      |  | |||  ||||    || | ||     || | | |  | || |   ||| ||       | |  |||||| || || ||||||||||| |||||||||||||| ||||||||||||||||||  | |  |   |   ||   | | |  | | | |  | | |   ||  
gtaattcatt--gggttttgttatttgaaatttgaagggcattggacttttttggtttttaggttggtttcttatttctctgattgatttatgtattttcttaatgcagGAAGAACCCAAGGAAGAGAGTGATGATGACATGGGCTTTAGCTTGTTTGATTAGGAGCTTTTGATTTGGTTTGTCGCTA--GTTTAGTCCTGTGTTAAATCT

upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv02s0025g02780.t01 (Vitis vinifera), 3'ss of exon 3
------acttcgtcacgagttctatccatggcgcctccgcctgtgtcgg--atcttttcattctgggcatagttatcaa-taatgtgttc--tttgtggcg---------atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT
       ||    |   | || |||    |         | ||| | |   ||  ||||||| |     |  || |    |||||||||   |||||   |         |  |   |||||||| |||||||||||||| ||||| ||||||||||| || ||||||||||||  | || |||    || ||            | | | |    ||||
gtaggagctattcctttaattttatttgagtaatacatacatgttttgattatggtttcatttttttttttttttttgcctaatgtgtttggtttgttctgggttgccaaaatactacagGAGGAACCAAAGGAAGAGAGTGATGAGGACATGGGATTCAGTTTGTTTGATTAGGAGCTCCTTTCAGTATGAATAGTATTTTGCAATTTTATGACTTCAT

upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv16s0098g01010.t01 (Vitis vinifera), 3'ss of exon 2
acttcgtcacgagttctatccatggcgcctccgcctgtgtcggat--cttttcattctgggcatagttatcaataatgtgttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT--
  ||  |||    | || |  |||     |   | | | ||  ||  | ||   || |     |     |   | ||   || ||| ||    ||||  ||||| || ||||||||||| || || || ||||||||||| ||||||||||| |||  | || |||     || |  | ||   ||   | ||||| |  ||  
tatttttcatagttactgtg-atgagtttttttcatatttctaatgacattgagtttttcttgtttgatttgcttattacttgtttttgaatgtgat-acagGAAGAACCAAAGGAAGAAAGTGACGACGACATGGGATTCAGCTTGTTTGACTAGGAGCTCCTTTCGGCTTTCAGTATGAT--ATTGTTCTTTTTGCAAATTA

upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ07677 (Selaginella moellendorffii), 3'ss of exon 3
acttcgtcacgagttctatccatggcgcctccgcctgtgtcggatcttttcattctgggcatagttatcaataatgtgttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT
                                |  ||  |  |    | | | ||||| | |  |     | | |  ||| ||||    ||      ||||||||  | || ||||||||||||||||||||||| ||||||||||| ||||||                                              
--------------------------------gtatgaatttgggggtgttactctggtc-tcttggctgaaattaggttttttggcttgaaa----cagGAGGAAGCGAAAGAAGAGAGCGATGATGACATGGGCTTTAGCTTGTTCGATTAG----------------------------------------------

upper sequence: PP1S28_131V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ07730 (Selaginella moellendorffii), 3'ss of exon 3
acttcgtcacgagttctatccatggcgcctccgcctgtgtcggatcttttcattctgggcatagttatcaataatgtgttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT
                                |  ||  |  |    |||   ||||| |   |      | | |  ||| ||||    ||      ||||||||  | || ||||||||||| ||||||||||| ||||||||||| ||||||                                              
--------------------------------gtatgaatttgggggttttcctctggtctctgg-gctgaaattaggttttttggcttgaaa----cagGAGGAAGCGAAAGAAGAGAGCGACGATGACATGGGCTTTAGCTTGTTCGATTAG----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162212130|gb|FC388240.1|FC388240
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|18336644|gb|BJ168667.1|BJ168667
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|18328416|gb|BJ160421.1|BJ160421
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162204940|gb|FC380622.1|FC380622
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|208380663|gb|DC919407.1|DC919407
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67721293|gb|BJ971552.1|BJ971552
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|19784620|gb|BQ040215.1|BQ040215
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162272286|gb|FC448990.1|FC448990
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67721505|gb|BJ971764.1|BJ971764
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162211909|gb|FC387781.1|FC387781
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162247100|gb|FC422274.1|FC422274
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162223265|gb|FC400234.1|FC400234
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67728255|gb|BJ978514.1|BJ978514
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGCTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67724164|gb|BJ974423.1|BJ974423
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162249364|gb|FC424008.1|FC424008
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162276648|gb|FC452226.1|FC452226
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67726840|gb|BJ977099.1|BJ977099
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67719997|gb|BJ970256.1|BJ970256
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGCTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162249365|gb|FC424009.1|FC424009
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162229605|gb|FC404873.1|FC404873
EST:     CTGCTGCTTCCGTTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162212129|gb|FC388239.1|FC388239
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162237581|gb|FC413651.1|FC413651
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162275685|gb|FC451362.1|FC451362
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162223266|gb|FC400235.1|FC400235
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162241567|gb|FC414689.1|FC414689
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|208393919|gb|DC946129.1|DC946129
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67709652|gb|BJ965468.1|BJ965468
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162272285|gb|FC448989.1|FC448989
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162205764|gb|FC381002.1|FC381002
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67727946|gb|BJ978205.1|BJ978205
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67727415|gb|BJ977674.1|BJ977674
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162211908|gb|FC387780.1|FC387780
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162204941|gb|FC380623.1|FC380623
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|208348311|gb|DC905525.1|DC905525
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162205765|gb|FC381003.1|FC381003
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162247099|gb|FC422273.1|FC422273
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162237582|gb|FC413652.1|FC413652
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|162229606|gb|FC404874.1|FC404874
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67723728|gb|BJ973987.1|BJ973987
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
EST: gi|67710237|gb|BJ965900.1|BJ965900
EST:     CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAG                         GAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT
genomic: CTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 45

GAGGTGGTGGTGCTGTTGCTGTGAGCGCCGCACCTGCTGCTTCCGCTGCTGCAGAGGCTGCCCCCAAGGAGGAGGAGAAGAAGgtgagagaag ... atgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcattctgggcatagttatcaataatgtgttctttgtggcgatgatcgcagGAGGAGCCAAAGGAAGAGAGCGATGATGACATGGGATTTAGCTTGTTTGATTAGATGATCATTTGTCAATTAAACACGACGGATGAATATTTTTTCTCAT
               atagttatcaataat  TA-rich tract