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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaataactaagcatgtattgaacttccaaaagtatcggttagagattggatgtgtaatattatattgtagtcatcgtcggagttgggtccctgttattcgctgatatgattgttctgaaaaatttgtgaagttgacagctctgtatttaatattcaaatgtttgcgggtacttttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG

Basic information

species Physcomitrella patens
transcript PP1S276_27V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208390704|gb|DC937860.1|DC937860
EST:     TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAG                         TGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
genomic: TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAGgtgaaataac ... ttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
EST: gi|100427017|gb|BY977480.1|BY977480
EST:     TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAG                         TGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCNTCA-TG
genomic: TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAGgtgaaataac ... ttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCC-TCAATG
EST: gi|162181709|gb|FC358739.1|FC358739
EST:     TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAG                         TGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
genomic: TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAGgtgaaataac ... ttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
EST: gi|208364640|gb|DC935425.1|DC935425
EST:     TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAG                         TGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
genomic: TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAGgtgaaataac ... ttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
EST: gi|100389661|gb|BY952467.1|BY952467
EST:     TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAG                         TGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
genomic: TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAGgtgaaataac ... ttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
EST: gi|208359584|gb|DC934599.1|DC934599
EST:     TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAG                         TGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
genomic: TAACTGCGGGAGCTTCGAATCGAGTTTGCAACGCTCTGGCTTTGCTCCAGgtgaaataac ... ttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttgacagctctgtatttaatattcaaatgtttgcgggtacttttgcgtgcagTGTGTTGCCTCTCATCCGGACACTCGAGCTCTTTTCCTCAATG
                atttaat  putative branch site (score: 4)
                                        tactttt  putative PPT
             tgtatttaatattcaa  TA-rich tract