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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgttatcagcatgttaattttttatttgtaggttcctattgagtatttaatgtcaatggcacctatgttttaggcatactgcttcagttgtattctctcaattatactcttatattttatccgttgatatgttatctgtaatatcttgtatttctaactacttgtgatgatggcagGGGGTCAAACGAGTATCAG

Basic information

species Physcomitrella patens
transcript PP1S271_49V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386675|gb|DC929121.1|DC929121
EST:     TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAG                         GGGGTCAAACGAGTATCAG
genomic: TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAGgttcgtgtta ... atgatggcagGGGGTCAAACGAGTATCAG
EST: gi|208374444|gb|DC940717.1|DC940717
EST:     TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAG                         GGGGTCAAACGAGTATCAG
genomic: TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAGgttcgtgtta ... atgatggcagGGGGTCAAACGAGTATCAG
EST: gi|162240378|gb|FC419311.1|FC419311
EST:     TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAG                         GGGGTCAAACGAGTATCAG
genomic: TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAGgttcgtgtta ... atgatggcagGGGGTCAAACGAGTATCAG
EST: gi|208392443|gb|DC907920.1|DC907920
EST:     TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAG                         GGGGTCAAACGAGTATCAG
genomic: TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAGgttcgtgtta ... atgatggcagGGGGTCAAACGAGTATCAG
EST: gi|67569908|gb|BJ942732.1|BJ942732
EST:     TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAG                         GGGGTCAAACGAGTATCAG
genomic: TGTGGAGACTGTGACATACAACAATATAAAGTTTCAAGTCTGGGATTTAGgttcgtgtta ... atgatggcagGGGGTCAAACGAGTATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttgatatgttatctgtaatatcttgtatttctaactacttgtgatgatggcagGGGGTCAAACGAGTATCAG
                              ttctaac  putative branch site (score: 1)
                 taatatcttgtattt  TA-rich tract