1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcacgcagcctccaatattcaccaatttgtctaatttcagcataatagtcttctaagaacagtccacatcactcatattcaagcaaacggtcgttgggtgctttttgctgtcgtttttgtgctgaaggaggtgacgtcttggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAAGATCTTGAGATGGTGCAGTCAGTGATCGAATCAGCGAAGAAGGCATACG
species | Physcomitrella patens |
transcript | PP1S269_15V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAG GGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAAEST: gi|162194348|gb|FC369532.1|FC369532
genomic: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAGgcacgcagcc ... tggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAA
EST: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAG GGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAAEST: gi|100434238|gb|BY979026.1|BY979026
genomic: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAGgcacgcagcc ... tggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAA
EST: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAG GGTTTGTTTGAG-TTGAAAGAGCATTTCA-CACAGCTGCGGTGCCGTGAGCEST: gi|162232944|gb|FC407857.1|FC407857
genomic: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAGgcacgcagcc ... tggtgtccagGGTTTGTT-GAGGTTGAAAGAGCATT-CAACACAGCTGCGGTGCCGTGAGC
EST: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAG GGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAAEST: gi|100376652|gb|BY949399.1|BY949399
genomic: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAGgcacgcagcc ... tggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAA
EST: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAG GGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAAEST: gi|208396033|gb|DC915793.1|DC915793
genomic: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAGgcacgcagcc ... tggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAA
EST: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAG GGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAA
genomic: CTAGTGATAATGAGGATTATCCCCAACTTCTAGAAGCACTCGTCATCCAGgcacgcagcc ... tggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAA
tgggtgctttttgctgtcgtttttgtgctgaaggaggtgacgtcttggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAAGATCTTGAGATGGTGCAGTCAGTGATCGAATCAGCGAAGAAGGCATACG
tttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacgcagcctccaatattcaccaatttgtctaatttcagcataatagtcttctaagaacagtccacatcactcatattcaagcaaacggtcgttgggtgctttttgctgtcgtttttgtgctgaaggaggtgacgtcttggtgtccagGGTTTGTTGAGGTTGAAAGAGCATTCAACACAGCTGCGGTGCCGTGAGCAAGATCTTGAGATGGTGCAGTCAGTGATCGAATCAGCGAAGAAGGCATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG