Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaataccttatcagtgctcatatctcatccgtcacacgtcttttggaagagtgacacacatgtacgcattctattttgaaactagatttcaaaattcgtaattcagactatgaccacattgttaatgtatacgattactgacaattgcgattttattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC

Basic information

species Physcomitrella patens
transcript PP1S264_65V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S264_65V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ13677 (Selaginella moellendorffii), 3'ss of exon 2
gtaagtaataccttatcagtgctcatatctcatccgtcacacgtcttttggaagagtgacacacatgtacgcattctattttgaaactagatttcaaaattcgtaattcagactatgaccacattgttaatgtatacgattactgacaattgcgattttattctgcagGCCGCCAGCTCCGG---AGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC
                                                                                           ||| |||||      |   | ||||  |     |     | | |||  | | | | |  ||| ||   |   || |||   | ||||| ||   |||||   | || ||  |||||||||||||||| ||||| ||||| ||||| ||| | || || || ||||||||||||||||   
------------------------------------------------------------------------------------------gtttgaaaatct----tctcgtctatcgcttttctcccctt-tctactttcatt-atagatgctat--gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---

upper sequence: PP1S264_65V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ29227 (Selaginella moellendorffii), 3'ss of exon 2
gtaagtaataccttatcagtgctcatatctcatccgtcacacgtcttttggaagagtgacacacatgtacgcattctattttgaaactagatttcaaaattcgtaattcagactatgaccacattgttaatgtatacgattactgacaattgcgattttattctgcagGCCGCCAGCTCCGG---AGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC
                                                                                           ||| |||||      |   | ||||  |     |     | | |||  | | | | |  ||| ||   |   || |||   | ||||| ||   |||||   | || ||  |||||||||||||||| ||||| ||||| ||||| ||| | || || || ||||||||||||||||   
------------------------------------------------------------------------------------------gtttgaaaatct----tcgcgtctatcgcttttctcccctt-tctactttcatt-atagatgctat--gagagtgtagGTTTCGAGCTCTGGTGGAGCCAAGCGCGCTGTTGCCGAGGCCAAGATCAAAGTTGCGATCAATGGATTTGGAAGAATTGGCCGGAACTTCATCCGCTGCT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228229|gb|FC404945.1|FC404945
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162168920|gb|FC345394.1|FC345394
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100443927|gb|BY982155.1|BY982155
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100361383|gb|BY965813.1|BY965813
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100388000|gb|BY988473.1|BY988473
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100390402|gb|BY952810.1|BY952810
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67718268|gb|BJ968527.1|BJ968527
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67719310|gb|BJ969569.1|BJ969569
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162215397|gb|FC391893.1|FC391893
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18326785|gb|BJ158785.1|BJ158785
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162168685|gb|FC343947.1|FC343947
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18332485|gb|BJ164498.1|BJ164498
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGTCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18372559|gb|BJ204161.1|BJ204161
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|208348486|gb|DC901963.1|DC901963
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|208346898|gb|DC913109.1|DC913109
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162193790|gb|FC368704.1|FC368704
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100450254|gb|CJ974171.1|CJ974171
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67719793|gb|BJ970052.1|BJ970052
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100451645|gb|CJ974870.1|CJ974870
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67712616|gb|BJ966065.1|BJ966065
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18346168|gb|BJ178211.1|BJ178211
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|162233737|gb|FC410003.1|FC410003
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67703953|gb|BJ964186.1|BJ964186
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100427801|gb|BY977680.1|BY977680
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100404835|gb|BY991305.1|BY991305
EST:     AAAAACGCTCCGATGATCTCCCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67716176|gb|BJ966436.1|BJ966436
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100407041|gb|BY973978.1|BY973978
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100447195|gb|CJ971494.1|CJ971494
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100449419|gb|CJ973718.1|CJ973718
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67718512|gb|BJ968771.1|BJ968771
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100383479|gb|BY950263.1|BY950263
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100433730|gb|BY960678.1|BY960678
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100398049|gb|BY954062.1|BY954062
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGCTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18368099|gb|BJ200184.1|BJ200184
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100446321|gb|CJ970620.1|CJ970620
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18330501|gb|BJ162507.1|BJ162507
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100394281|gb|BY972016.1|BY972016
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|208350984|gb|DC910489.1|DC910489
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100392236|gb|BY953262.1|BY953262
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTCGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67716424|gb|BJ966684.1|BJ966684
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67717815|gb|BJ968074.1|BJ968074
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|100444994|gb|BY982822.1|BY982822
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|67716878|gb|BJ967137.1|BJ967137
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
EST: gi|18373009|gb|BJ204611.1|BJ204611
EST:     AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTG                         GCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT
genomic: AAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 14

TGGACTCGCGGAATTCTCCGGGATGAAGAGCGTTAATTGTGTTACCTTCGAAAAACGCTCCGATGATCTCTCTACTATCGTCGCTGCTCAGACCGTTGTGgtaagtaata ... tattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaccacattgttaatgtatacgattactgacaattgcgattttattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC
                           tactgac  putative branch site (score: 14)
                                          ttttattct  putative PPT
         attgttaatgtata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaataccttatcagtgctcatatctcatccgtcacacgtcttttggaagagtgacacacatgtacgcattctattttgaaactagatttcaaaattcgtaattcagactatgaccacattgttaatgtatacgattactgacaattgcgattttattctgcagGCCGCCAGCTCCGGAGCCAGCAGGGCCGTCACCGAGGCCAAGATCAAGGTTGCCATCAACGGATTCGGACGTATCGGACGCAACTTCATCCGCTGCTGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT