1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttacttgagctgtgttctccttcgttgaggatatgacaatgcaccttggagagggacatcctcatcttgctgtctgaggattttctggtggctctcacagGAAGCGTCTTTTTAATATGGTAAACGAGCTCCCAACTGTATTTGACGTAGTCACAGGGAAAAAGCCCGTGAAAGACAAGCCTGCTGTTAATAACAACTCT
species | Physcomitrella patens |
transcript | PP1S262_27V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCGCTGTTGCTTTCTACTACGGAGCTCGGTTTGATAAGAACNAGAG GAAGCGTCTTTTTANTATGGTAAACNAGCTCCCAACTGTATTTGACGTAATEST: gi|100436873|gb|BY979568.1|BY979568
genomic: CTGCTCGCTGTTGCTTTCTACTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctgtc ... gctctcacagGAAGCGTCTTTTTAATATGGTAAACGAGCTCCCAACTGTATTTGACGTAGT
EST: CTGCTCGCTGTTGCTTTCTACTACGGAGCTCGGTTTGATAAGAACGAGAG GAAGCGTCTTT
genomic: CTGCTCGCTGTTGCTTTCTACTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctgtc ... gctctcacagGAAGCGTCTTT
ttggagagggacatcctcatcttgctgtctgaggattttctggtggctctcacagGAAGCGTCTTTTTAATATGGTAAACGAGCTCCCAACTGTATTTGACGTAGTCACAGGGAAAAAGCCCGTGAAAGACAAGCCTGCTGTTAATAACAACTCT
ctctcac CT-rich tract
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacttgagctgtgttctccttcgttgaggatatgacaatgcaccttggagagggacatcctcatcttgctgtctgaggattttctggtggctctcacagGAAGCGTCTTTTTAATATGGTAAACGAGCTCCCAACTGTATTTGACGTAGTCACAGGGAAAAAGCCCGTGAAAGACAAGCCTGCTGTTAATAACAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT