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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttcaaagattaatactaggcatggacaacatccgccgctacgttactccctcctcattatccttgacaaattgatttgcaattcatcgaacatgttaagctctgttcctcaaagttaaggtggctgtatgcggataatgatgtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCCGAGACTCTGCCAGACCCTCGAGGATTTGCCGTGAAGATGTACACGCGGG

Basic information

species Physcomitrella patens
transcript PP1S259_126V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384851|gb|DC907464.1|DC907464
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67718671|gb|BJ968930.1|BJ968930
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208377750|gb|DC940862.1|DC940862
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208391105|gb|DC938135.1|DC938135
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208374471|gb|DC941200.1|DC941200
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAACCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208358178|gb|DC939374.1|DC939374
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67717845|gb|BJ968104.1|BJ968104
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGACTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208387137|gb|DC941309.1|DC941309
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208364305|gb|DC935576.1|DC935576
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208364257|gb|DC935528.1|DC935528
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208393656|gb|DC907807.1|DC907807
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67702179|gb|BJ962412.1|BJ962412
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAG
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAG
EST: gi|67712527|gb|BJ965976.1|BJ965976
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208390335|gb|DC929283.1|DC929283
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208372156|gb|DC936934.1|DC936934
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67704770|gb|BJ965003.1|BJ965003
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208390550|gb|DC937482.1|DC937482
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208363794|gb|DC943251.1|DC943251
EST:     TCAGAGGCGTCGGGGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: TCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67717320|gb|BJ967579.1|BJ967579
EST:     ACGTCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208357002|gb|DC930032.1|DC930032
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208353748|gb|DC938773.1|DC938773
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208370371|gb|DC931783.1|DC931783
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208366720|gb|DC931377.1|DC931377
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGANAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208362608|gb|DC931029.1|DC931029
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208353668|gb|DC929711.1|DC929711
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208371487|gb|DC931838.1|DC931838
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208391441|gb|DC937589.1|DC937589
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208374632|gb|DC931971.1|DC931971
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208356923|gb|DC942669.1|DC942669
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67703497|gb|BJ963730.1|BJ963730
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACG
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACG
EST: gi|208394247|gb|DC933915.1|DC933915
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATGCACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208387954|gb|DC932878.1|DC932878
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|18350719|gb|BJ182770.1|BJ182770
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208366660|gb|DC931317.1|DC931317
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67712529|gb|BJ965978.1|BJ965978
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67719593|gb|BJ969852.1|BJ969852
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67709324|gb|BJ965140.1|BJ965140
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208379536|gb|DC911147.1|DC911147
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208369236|gb|DC936051.1|DC936051
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208367245|gb|DC939817.1|DC939817
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|18346805|gb|BJ178850.1|BJ178850
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCCCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208377086|gb|DC936818.1|DC936818
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208358975|gb|DC939231.1|DC939231
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208389713|gb|DC933615.1|DC933615
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208346392|gb|DC905297.1|DC905297
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67717657|gb|BJ967916.1|BJ967916
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208374745|gb|DC932028.1|DC932028
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208377653|gb|DC932189.1|DC932189
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208391256|gb|DC933517.1|DC933517
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67720025|gb|BJ970284.1|BJ970284
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67716758|gb|BJ967018.1|BJ967018
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67718893|gb|BJ969152.1|BJ969152
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208346674|gb|DC913320.1|DC913320
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208367164|gb|DC935964.1|DC935964
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67704422|gb|BJ964655.1|BJ964655
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67716749|gb|BJ967009.1|BJ967009
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208353664|gb|DC929707.1|DC929707
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208393315|gb|DC942455.1|DC942455
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208387871|gb|DC929215.1|DC929215
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208376966|gb|DC936772.1|DC936772
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208394402|gb|DC942562.1|DC942562
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67703535|gb|BJ963768.1|BJ963768
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGA
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGA
EST: gi|67719757|gb|BJ970016.1|BJ970016
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208362187|gb|DC935629.1|DC935629
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|18358219|gb|BJ190278.1|BJ190278
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67702150|gb|BJ962383.1|BJ962383
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208383981|gb|DC907372.1|DC907372
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67709790|gb|BJ965606.1|BJ965606
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208390300|gb|DC942037.1|DC942037
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208357017|gb|DC942707.1|DC942707
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208375476|gb|DC940502.1|DC940502
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|208372368|gb|DC936484.1|DC936484
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67719949|gb|BJ970208.1|BJ970208
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67717944|gb|BJ968203.1|BJ968203
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|18344805|gb|BJ176846.1|BJ176846
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
EST: gi|67703045|gb|BJ963278.1|BJ963278
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACG
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACG
EST: gi|208389909|gb|DC937740.1|DC937740
EST:     ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAG                         ACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC
genomic: ACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 33 (downstream exon)
Score: 23

TGTGCACGCTCGTGGAGCAGGTGCCAAGGGCTACTTCGAAGTCACCCATGACATCACTCACCTCACCTGTGCCGACTTCCTCAGAGGCGTCGGAGTCCAGgtgcgtttca ... gtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCCGAGACTCTGCCAGACCCTCGAGGATTTGCCGTGAAGATGTACACGCGGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagctctgttcctcaaagttaaggtggctgtatgcggataatgatgtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCCGAGACTCTGCCAGACCCTCGAGGATTTGCCGTGAAGATGTACACGCGGG
                                            tgttttt  CT-rich tract
                                     ataatgatgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtttcaaagattaatactaggcatggacaacatccgccgctacgttactccctcctcattatccttgacaaattgatttgcaattcatcgaacatgttaagctctgttcctcaaagttaaggtggctgtatgcggataatgatgtttttgtagACACCTCTCATTGCGCGATTCTCGACGGTCATACACGAGAAGGGAAGCCCCGAGACTCTGCCAGACCCTCGAGGATTTGCCGTGAAGATGTACACGCGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG