1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggtttaggattccactactcctgtttctttcatccttataatagtgactctgttcccagtctaatgggtgaatgtctcatttttgttaacgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGTTGGTTTTATTGCAAAGGACAAGAAATGTAGACAATTTAACAGGCAACT
species | Physcomitrella patens |
transcript | PP1S258_82V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAG GTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGEST: gi|208385306|gb|DC915106.1|DC915106
genomic: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAGgtaatgtaat ... cgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAG
EST: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAG GTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGEST: gi|208394693|gb|DC928853.1|DC928853
genomic: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAGgtaatgtaat ... cgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAG
EST: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAG GTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGEST: gi|67575434|gb|BJ948258.1|BJ948258
genomic: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAGgtaatgtaat ... cgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAG
EST: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAG GTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGEST: gi|18331470|gb|BJ163481.1|BJ163481
genomic: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAGgtaatgtaat ... cgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAG
EST: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAG GTTTTGTGGACCTTCTCTCTGTATTTGGAGGCEST: gi|208360478|gb|DC950052.1|DC950052
genomic: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAGgtaatgtaat ... cgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGC
EST: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAG GTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGEST: gi|162254204|gb|FC429923.1|FC429923
genomic: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAGgtaatgtaat ... cgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAG
EST: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAG GTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAG
genomic: CATGTCTACTGCTAGCTCTGGTTCTGAACAACAGGTTCACTTTCCGGGAGgtaatgtaat ... cgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAG
tgactctgttcccagtctaatgggtgaatgtctcatttttgttaacgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGTTGGTTTTATTGCAAAGGACAAGAAATGTAGACAATTTAACAGGCAACT
tgttaac putative branch site (score: 2)
atttttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtttaggattccactactcctgtttctttcatccttataatagtgactctgttcccagtctaatgggtgaatgtctcatttttgttaacgtggaacagGTTTTGTGGACCTTCTCTCTGTATTTGGAGGCGGTTGCCATAATACCACAGTTGGTTTTATTGCAAAGGACAAGAAATGTAGACAATTTAACAGGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA