1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttttattgactgttttttctgacgcctccttgtaattaatttataaatttgatgcttatttgtgactacacagaataagtttctttagggaaacacttcaagtgaatttacgagatgttatattttcactctttgaccagtttgcattcattgccatcttttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAAGACTTATGACCGAGGATTTCCTGTTGGTCAAAAGCTATCCTTGTCTGAT
species | Physcomitrella patens |
transcript | PP1S24_182V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAAEST: gi|18325719|gb|BJ157716.1|BJ157716
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAA
EST: TCTGCCAAGCTCTTCAAA-A--GGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACCTGCCAGTGGCGATGGTCEST: gi|208350408|gb|DC906110.1|DC906110
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTC
EST: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAAEST: gi|18344133|gb|BJ176172.1|BJ176172
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAA
EST: TCTGCCAAGCTCTTCNAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGGTAACCTGEST: gi|18325392|gb|BJ157388.1|BJ157388
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTG
EST: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACEST: gi|162256884|gb|FC432986.1|FC432986
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAAC
EST: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAAEST: gi|100405258|gb|BY955435.1|BY955435
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAA
EST: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAAEST: gi|208352204|gb|DC906307.1|DC906307
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAA
EST: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACCTGCCANTGGCGATGGTCCACTTTGTAAACCGAATTAAEST: gi|18362890|gb|BJ194962.1|BJ194962
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAA
EST: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACAT GATCCTTGATAACCTGCCAGTGGCCGATGGTCCACTTTGTAA
genomic: TCTGCCAAGCTCTTCAAAGAAAGGATTAAGTATGACTACCGTGTAAACATgtaagtttta ... tttcatgcagGATCCTTGATAACCTGCCAGTGGC-GATGGTCCACTTTGTAA
atgttatattttcactctttgaccagtttgcattcattgccatcttttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAAGACTTATGACCGAGGATTTCCTGTTGGTCAAAAGCTATCCTTGTCTGAT
ctttgac putative branch site (score: 4)
ccatcttttc putative PPT
atattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttattgactgttttttctgacgcctccttgtaattaatttataaatttgatgcttatttgtgactacacagaataagtttctttagggaaacacttcaagtgaatttacgagatgttatattttcactctttgaccagtttgcattcattgccatcttttcatgcagGATCCTTGATAACCTGCCAGTGGCGATGGTCCACTTTGTAAACCGAATTAAGACTTATGACCGAGGATTTCCTGTTGGTCAAAAGCTATCCTTGTCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT