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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attagatttgaaagagtacatatgtctggaagttacttcttgttattgtttttatggttctgacacaggcgtttttgtggccggtgctttttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG

Basic information

species Physcomitrella patens
transcript PP1S245_32V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100385818|gb|BY951012.1|BY951012
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100406597|gb|BY955683.1|BY955683
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100418696|gb|BY975696.1|BY975696
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208387770|gb|DC941339.1|DC941339
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100415871|gb|BY956965.1|BY956965
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|67508675|gb|BJ941536.1|BJ941536
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100448950|gb|CJ973249.1|CJ973249
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208349271|gb|DC906385.1|DC906385
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAN
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208346232|gb|DC905221.1|DC905221
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208352262|gb|DC906337.1|DC906337
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208366055|gb|DC935844.1|DC935844
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208372135|gb|DC940317.1|DC940317
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|18358101|gb|BJ190160.1|BJ190160
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208390049|gb|DC938104.1|DC938104
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100419714|gb|BY957686.1|BY957686
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208358250|gb|DC930691.1|DC930691
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208357678|gb|DC934130.1|DC934130
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100442532|gb|BY963226.1|BY963226
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100366066|gb|BY967268.1|BY967268
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208366022|gb|DC935839.1|DC935839
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|100386786|gb|BY970327.1|BY970327
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208374981|gb|DC956391.1|DC956391
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208356440|gb|DC934430.1|DC934430
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
EST: gi|208386327|gb|DC932823.1|DC932823
EST:     CCGCATTTGGAAAATGGAGATAAAG                         TGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
genomic: CCGCATTTGGAAAATGGAGATAAAGgtattgtcat ... ttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttttatggttctgacacaggcgtttttgtggccggtgctttttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG
                                       tgcttttt  CT-rich tract
                                          tttttaattcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attagatttgaaagagtacatatgtctggaagttacttcttgttattgtttttatggttctgacacaggcgtttttgtggccggtgctttttaattctagTGGTTATGCCTCCTTCGGCGCTTGATCGCTTAG

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