1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgaggatgagagaagttcagttcttttgttattatgtgtaattgattaattatgttacctcttattttcatgaccatgtcgtttgtcatgtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTTGTTGAGTTGACGCGGGATAAACCTATCAATGTTCGATTTATAGAATTCA
species | Physcomitrella patens |
transcript | PP1S23_46V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTTEST: gi|162163476|gb|FC340010.1|FC340010
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTTEST: gi|162161664|gb|FC339079.1|FC339079
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTTEST: gi|162265839|gb|FC442426.1|FC442426
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTTEST: gi|162205183|gb|FC381281.1|FC381281
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
EST: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAG GTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
genomic: TCCTTCAGTCCATTGACACAGCATTGGGATTGGGATTGTCTCCGGTGAAGgtgagacgcc ... gtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTT
attaattatgttacctcttattttcatgaccatgtcgtttgtcatgtgtgcacagGTAAATACAGTTGTAATGAGGGGTCTCAATGACGACGAGATCCTAGATTTTGTTGAGTTGACGCGGGATAAACCTATCAATGTTCGATTTATAGAATTCA
gattaat putative branch site (score: 3)
ttattttcat TA-rich tract