1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCACCGAGCATTTCGAGATGTGGGGCGATGGCAAGCAAACTCGCTCCTTCAC
species | Physcomitrella patens |
transcript | PP1S237_14V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCATTGGTCGCTTTCACAACATTTATGGCCCATACGATAACCTGGAAGG GTGGGCGTGAGAAGGCANCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162219883|gb|FC396698.1|FC396698
genomic: CGCATTGGTCGCTTTCACAACATTTATGGCCCATACG-GAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162165131|gb|FC341139.1|FC341139
genomic: CAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162207083|gb|FC382197.1|FC382197
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162184537|gb|FC360011.1|FC360011
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162154863|gb|FC331905.1|FC331905
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|37850522|gb|BJ608530.1|BJ608530
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162242164|gb|FC418416.1|FC418416
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162228992|gb|FC404221.1|FC404221
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|37821379|gb|BJ579445.1|BJ579445
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|100449002|gb|CJ973301.1|CJ973301
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAANG GTGGGCCGTGAGAEST: gi|162263399|gb|FC438622.1|FC438622
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGC-GTGAGA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162154656|gb|FC331594.1|FC331594
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGGAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|7286960|gb|AW599447.1|AW599447
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162197191|gb|FC374168.1|FC374168
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162223643|gb|FC399741.1|FC399741
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|67718099|gb|BJ968358.1|BJ968358
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAEST: gi|67508095|gb|BJ940966.1|BJ940966
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACNGAACCTGGAAGG GTGGGCGTGAGAEST: gi|162175896|gb|FC351574.1|FC351574
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTEST: gi|162258586|gb|FC434801.1|FC434801
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCT
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162247781|gb|FC423400.1|FC423400
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|18328178|gb|BJ160182.1|BJ160182
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|100385036|gb|BY987499.1|BY987499
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162272922|gb|FC448858.1|FC448858
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162184117|gb|FC358863.1|FC358863
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162215665|gb|FC391705.1|FC391705
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162169848|gb|FC346204.1|FC346204
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162190218|gb|FC366376.1|FC366376
genomic: CGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGCAGG GTGGGCGTGAGAAGGCACCCCNGC-GCCT-CTGCAGAAAG-CCTTGACAGCEST: gi|162215937|gb|FC392354.1|FC392354
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCC--GCCGCCTTCTGCAGAAAGGCCTTGACAGC
EST: CCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162190271|gb|FC366429.1|FC366429
genomic: CCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCEST: gi|162150224|gb|FC326309.1|FC326309
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGC
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162201901|gb|FC376899.1|FC376899
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCEST: gi|162208740|gb|FC384876.1|FC384876
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGC
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAAGCACCCGCCGCCTTCTGCAGEST: gi|162162668|gb|FC338970.1|FC338970
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAG
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162161530|gb|FC338737.1|FC338737
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162187337|gb|FC363495.1|FC363495
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|19788591|gb|BQ040802.1|BQ040802
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162192021|gb|FC367234.1|FC367234
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162153911|gb|FC329418.1|FC329418
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162245933|gb|FC419677.1|FC419677
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCAEST: gi|162157309|gb|FC333138.1|FC333138
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCA
EST: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGG GTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAG
genomic: CCGCATTGGTCGCTTTCACAACATTTATGGCCCATACGGAACCTGGAAGGgtaagtacag ... gcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAG
gccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCACCGAGCATTTCGAGATGTGGGGCGATGGCAAGCAAACTCGCTCCTTCAC
gagtaac putative branch site (score: 40)
cttgcct putative PPT
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacaggagagattcgcccatcattattcacttttttaatctctttaaacttatctcaaatcgaagtatcattaatgtagtcagatgtacttgtgttttgccttgattctttctcgagggttctgagtaaccattgttgagcttgcctgtacagGTGGGCGTGAGAAGGCACCCGCCGCCTTCTGCAGAAAGGCCTTGACAGCCACCGAGCATTTCGAGATGTGGGGCGATGGCAAGCAAACTCGCTCCTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA