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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcctgtgacaaacttagtggaatttgttctcgtcagaagttgctgacgttggaagtttttctgagtcagaaacctgacagtcgctctgtatgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACCTCAGACGAACGAGCCAATAGAAATGTGGATATCCTACGTGACTTTGCTC

Basic information

species Physcomitrella patens
transcript PP1S227_66V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA20G34160.1 (Glycine max), 3'ss of exon 3
gcctgtga-caaacttagtggaatttgttctcgtcagaagttgctgacgttggaa-gtttttctgagtcagaaacctgacagtcgctctgtatgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACCTCAGACGAACGAGCCAATAGAAATGTGGATATCCTACGTGACTTTGCTC
  || ||| |||||||  |     |   |  |  ||  | |||    |     ||  ||  |    ||  |||   | |       | |  |||   |  |||| ||||| ||||||||||| ||| ||||||| ||||||||||| || ||    || ||||| ||  |  | |||||||||||     | || |||  | 
agctatgaacaaactttttaacgatatattactacatcatttgacaccaaaaaaatattactacatgtttgaataataatgtaaatttttcatg--ctaaagGTTTGGGACCGTGAAAAGATTGTGGTTATCCCTGATCATTACATATTCACAAATGATGAACGCGCACACCGCAATGTGGATATTGCTAGAGATTTTTGTG

upper sequence: PP1S227_66V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ32611 (Selaginella moellendorffii), 3'ss of exon 2
gcctgtgacaaacttagtggaatttgttctcgtcagaagttgctgacgttggaagtttttctgagtcagaaacctgacagtcgctctgtatgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACCTCAGACGAACGAGCCAATAGAAATGTGGATATCCTACGTGACTTTGCTC
                                        | |  | | |  |  |||||||   |   | | |||      || ||          ||||| |||||||| || ||||| ||| | ||||||||||| ||||| |||||  | ||||| || || ||| |||||||||||||  | || |||||| |  
---------------------------------------gtacgtatgctacacatttttctcttttctagatctg-----tgccct----------cagGTTTGGGATCGCGAGAAGATTGTGATCATCCCCGATCACTACATCTTTACTGCGGACGAGCGCGCTAATCGAAATGTGGATATTTTGCGGGACTTTTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278618|gb|FC455016.1|FC455016
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|19790555|gb|BQ041934.1|BQ041934
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100388195|gb|BY951797.1|BY951797
EST:     TCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: TCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100440503|gb|BY962232.1|BY962232
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|208389895|gb|DC937726.1|DC937726
EST:     GCCCTGGAACCATTGGTATCTTCGAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100413212|gb|BY956563.1|BY956563
EST:     AAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: AAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|67717186|gb|BJ967445.1|BJ967445
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100388007|gb|BY988480.1|BY988480
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|18364790|gb|BJ196863.1|BJ196863
EST:     GCCCTGGAACCATTGGTATCTTCAAGAGAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100444345|gb|BY982374.1|BY982374
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100361431|gb|BY965837.1|BY965837
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100364743|gb|BY947886.1|BY947886
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100362006|gb|BY947736.1|BY947736
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100428300|gb|BY977734.1|BY977734
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100438751|gb|BY961784.1|BY961784
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|67718911|gb|BJ969170.1|BJ969170
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100384785|gb|BY950775.1|BY950775
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162172982|gb|FC347892.1|FC347892
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100442174|gb|BY963067.1|BY963067
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162158369|gb|FC334164.1|FC334164
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162164820|gb|FC340516.1|FC340516
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100425091|gb|BY976968.1|BY976968
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGAGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162199219|gb|FC375055.1|FC375055
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|18361605|gb|BJ193671.1|BJ193671
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162258438|gb|FC434445.1|FC434445
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|208344467|gb|DC905028.1|DC905028
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100410814|gb|BY956200.1|BY956200
EST:     AAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: AAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100353093|gb|BY945602.1|BY945602
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|208361763|gb|DC935003.1|DC935003
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162198077|gb|FC372104.1|FC372104
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|18347134|gb|BJ179180.1|BJ179180
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100390972|gb|BY952982.1|BY952982
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100406831|gb|BY955742.1|BY955742
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100362852|gb|BY947561.1|BY947561
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|19780614|gb|BQ039583.1|BQ039583
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|18360168|gb|BJ192230.1|BJ192230
EST:     GCCCTGGAACCATTGGTATCTTCAAGAGAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162163969|gb|FC339879.1|FC339879
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100385562|gb|BY969899.1|BY969899
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|162216862|gb|FC392212.1|FC392212
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|18327587|gb|BJ159590.1|BJ159590
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100449106|gb|CJ973405.1|CJ973405
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|100448912|gb|CJ973211.1|CJ973211
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
EST: gi|22492336|gb|BU052259.1|BU052259
EST:     GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAG                         GTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC
genomic: GCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 31 (downstream exon)
Score: 12

AGAGAATGTGTGGGTGAAGGCAGATGTTCTCATGACTCATGATGTTTGTGGCCCTGGAACCATTGGTATCTTCAAGAAAGAATTCGGTCAAAATGCTAAGgtatgttact ... tgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACCTCAGACGAACGAGCCAATAGAAATGTGGATATCCTACGTGACTTTGCTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgttggaagtttttctgagtcagaaacctgacagtcgctctgtatgagttgcagGTATGGGATCGTGAAAAGATCGTGCTTATCCCCGATCATTACATTTTTACCTCAGACGAACGAGCCAATAGAAATGTGGATATCCTACGTGACTTTGCTC
       aagttttt  TA-rich tract