1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgggggctaaacgtgcttacaggcagcttgtcaggaacgctgatgcaccacagcattcaaagatggctgttgtcttttagttgtcctaaatagataaacaaatacatattaattaaaaaaaataaaactactgagaacgtgagattagtttctgactaggtgcatttttgtaattggtgactgcagTCCACAGGATGGGATTCCGGGGAGCTTCAAAGTTTGGTTGAGAGGGGTTTGAGCCACCACACCAGTCGGCTTGGAGCGGTTGAAG
species | Physcomitrella patens |
transcript | PP1S226_51V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACGCGACATACGGTGCCTTCTTTCCACAATTCTGCCACCATCCCTCAG TCCACAGGATGGGATTCCGGGGAGCTTCAAAGTTTGGTTGAGAGGGGTTTGEST: gi|162206227|gb|FC382297.1|FC382297
genomic: TCACGCGACATACGGTGCCTTCTTTCCACAATTCTGCCACCATCCCTCAGgtgggggcta ... gtgactgcagTCCACAGGATGGGATTCCGGGGAGCTTCAAAGTTTGGTTGAGAGGGGTTTG
EST: TCACGCGACATACGGTGCCTTCTTTCCACAATTCTGCCACCATCCCTCAG TCCACAGGATGGGATTCCGGGGAGCTTCAAAGTTTGGTTGAGAGGGGTTTG
genomic: TCACGCGACATACGGTGCCTTCTTTCCACAATTCTGCCACCATCCCTCAGgtgggggcta ... gtgactgcagTCCACAGGATGGGATTCCGGGGAGCTTCAAAGTTTGGTTGAGAGGGGTTTG
tgagaacgtgagattagtttctgactaggtgcatttttgtaattggtgactgcagTCCACAGGATGGGATTCCGGGGAGCTTCAAAGTTTGGTTGAGAGGGGTTTGAGCCACCACACCAGTCGGCTTGGAGCGGTTGAAG
ttctgac putative branch site (score: 28)
atttttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggggctaaacgtgcttacaggcagcttgtcaggaacgctgatgcaccacagcattcaaagatggctgttgtcttttagttgtcctaaatagataaacaaatacatattaattaaaaaaaataaaactactgagaacgtgagattagtttctgactaggtgcatttttgtaattggtgactgcagTCCACAGGATGGGATTCCGGGGAGCTTCAAAGTTTGGTTGAGAGGGGTTTGAGCCACCACACCAGTCGGCTTGGAGCGGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG