1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtgtgtcactactggttgtcttattttgtaggaacttggtcgttctttatgtgctagactggaataagaattgctcacattcgaaagtgttttgacagCTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACCAACACCGGGATGCAGGATCAACTGCCTCCACGGCTATTTTGGTGGGAGA
species | Physcomitrella patens |
transcript | PP1S225_37V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAA-TTGNTAGGGCATCCTCAATTTGTAACTGACACCAACCTCGCAATTG CTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACCEST: gi|162279026|gb|FC454765.1|FC454765
genomic: GAATTTGCTAGGGCATCCTCAATTTGTAACTGACACCAACCTCGCAATTGgtatgtaatg ... gttttgacagCTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACC
EST: GAA-TTGCTAGGGCATCCTCAATTTGTAACTGACACCAACCTCGCAATTG CTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACCEST: gi|208351977|gb|DC925786.1|DC925786
genomic: GAATTTGCTAGGGCATCCTCAATTTGTAACTGACACCAACCTCGCAATTGgtatgtaatg ... gttttgacagCTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACC
EST: GAATTTGCTAGGGCATCCTCAATTTGTAACTGACACCAACCTCGCAATTG CTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACC
genomic: GAATTTGCTAGGGCATCCTCAATTTGTAACTGACACCAACCTCGCAATTGgtatgtaatg ... gttttgacagCTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACC
tctttatgtgctagactggaataagaattgctcacattcgaaagtgttttgacagCTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACCAACACCGGGATGCAGGATCAACTGCCTCCACGGCTATTTTGGTGGGAGA
tgctcac putative branch site (score: 3)
aataagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtgtcactactggttgtcttattttgtaggaacttggtcgttctttatgtgctagactggaataagaattgctcacattcgaaagtgttttgacagCTGAGACGTTTAAGAAAACCGATCAGGAATATCTCAAGGCTGACAACAACCAACACCGGGATGCAGGATCAACTGCCTCCACGGCTATTTTGGTGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacattc