1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcactttcaaaaagcttctctttgcgtaattcatcttgtttctaaagtgcttctagtcacaaattctgtggtattaatactgttcatgagttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTACTATGACGCAGCTACCAAGGGCCTCGACTTCAAGGGCCTCATGGAGGAT
species | Physcomitrella patens |
transcript | PP1S223_31V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|162256780|gb|FC432674.1|FC432674
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|18372779|gb|BJ204381.1|BJ204381
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAEST: gi|208361604|gb|DC942847.1|DC942847
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGCCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|162274186|gb|FC449946.1|FC449946
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|162257990|gb|FC434084.1|FC434084
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|162192506|gb|FC371697.1|FC371697
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|18363244|gb|BJ195316.1|BJ195316
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCEST: gi|162198689|gb|FC373470.1|FC373470
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTC
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|67716980|gb|BJ967239.1|BJ967239
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|100446972|gb|CJ971271.1|CJ971271
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTAEST: gi|208381144|gb|DC903034.1|DC903034
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTCANAACACTTTCCGTTAEST: gi|18367140|gb|BJ199221.1|BJ199221
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTA
EST: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAA CCATCACAACATCTGGAGGGATGCCAACGTTCCTC
genomic: CGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcattt ... gttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTC
aagtgcttctagtcacaaattctgtggtattaatactgttcatgagttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTACTATGACGCAGCTACCAAGGGCCTCGACTTCAAGGGCCTCATGGAGGAT
tattaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcactttcaaaaagcttctctttgcgtaattcatcttgtttctaaagtgcttctagtcacaaattctgtggtattaatactgttcatgagttgatgcagCCATCACAACATCTGGAGGGATGCCAACGTTCCTCAGAACACTTTCCGTTACTATGACGCAGCTACCAAGGGCCTCGACTTCAAGGGCCTCATGGAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT