1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagcaaacttttcctcgttttctgggaggcttcagtggataggcactgtatcacattcctgctcaggtgtagttggtctttaaaaagatgaatagagcgacgcatctgaacccttaaaattcgtcttatgaggttttaacacaagtggaccattgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCTTGCACAGAGGACTATCCACTTCATGTCACGAATCCCTATGGTCGCACTA
species | Physcomitrella patens |
transcript | PP1S221_46V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAAC CTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGANAGCGTGCCTEST: gi|208362654|gb|DC931047.1|DC931047
genomic: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCT
EST: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAAC CTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCTEST: gi|208389985|gb|DC938040.1|DC938040
genomic: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCT
EST: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAAC CTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCTEST: gi|208369068|gb|DC931639.1|DC931639
genomic: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCT
EST: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAAC CTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCTEST: gi|208362659|gb|DC931052.1|DC931052
genomic: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCT
EST: TTAGCACCATAAATCTTATGGAAGTTATGTCTAANAATAACTGCAAAAAC CTTGTATTCTCATCCTCANCAACAGTGTACGGACAACCANANAGCGTGCCTEST: gi|208361781|gb|DC935021.1|DC935021
genomic: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCT
EST: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAAC CTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCTEST: gi|100386844|gb|BY988113.1|BY988113
genomic: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCT
EST: TAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGGCAAAA-C CTTGTATTCTCATCCTCAGCAACAGTGTACGEST: gi|208389039|gb|DC937372.1|DC937372
genomic: TAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTG-CAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACG
EST: TTAGCACCATAAATCTTATGGAAGTTATGTCTAANAATAACTGCAAAAAC CTTGTATTCTCATCCTCANCAACAGTGTACGGACAACCANANAGCGTGCCT
genomic: TTAGCACCATAAATCTTATGGAAGTTATGTCTAAGAATAACTGCAAAAACgtgagcaaac ... ttgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCT
gaacccttaaaattcgtcttatgaggttttaacacaagtggaccattgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCTTGCACAGAGGACTATCCACTTCATGTCACGAATCCCTATGGTCGCACTA
ttttaac putative branch site (score: 9)
ttaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaaacttttcctcgttttctgggaggcttcagtggataggcactgtatcacattcctgctcaggtgtagttggtctttaaaaagatgaatagagcgacgcatctgaacccttaaaattcgtcttatgaggttttaacacaagtggaccattgcgtacagCTTGTATTCTCATCCTCAGCAACAGTGTACGGACAACCAGAGAGCGTGCCTTGCACAGAGGACTATCCACTTCATGTCACGAATCCCTATGGTCGCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA