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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtatttaataatatactcctggttccttttagcattccattctaattgctttcgcaagttttccgcattcaacagttatctgcattttgtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGATGGCGTCATGGGCTTATTGATGAG

Basic information

species Physcomitrella patens
transcript PP1S219_94V6.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162250292|gb|FC425946.1|FC425946
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162166620|gb|FC343512.1|FC343512
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|100384135|gb|BY950521.1|BY950521
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162190655|gb|FC367541.1|FC367541
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162154906|gb|FC331948.1|FC331948
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162186428|gb|FC362984.1|FC362984
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162166262|gb|FC342855.1|FC342855
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGATGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162150373|gb|FC326645.1|FC326645
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162157382|gb|FC333484.1|FC333484
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|208394292|gb|DC904112.1|DC904112
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162177008|gb|FC353685.1|FC353685
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
EST: gi|162270868|gb|FC446897.1|FC446897
EST:     GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAG                         GGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT
genomic: GACTACGATCTCTCCTGCAAATTTCATCCTCCCATTATTTGTTCACGAAGgtgtgtcctc ... gtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgctttcgcaagttttccgcattcaacagttatctgcattttgtggcatcagGGGAACAGAATGCACCGATCGGCGCTATGCCGGGTTGCCAGCGTCTCGGATGGCGTCATGGGCTTATTGATGAG
 ttctaat  putative branch site (score: 2)
            aagtttt  TA-rich tract