Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttgttggaaaaaggaaatatcgtggaatatgtctgtatgtttcggggtaagagtgaggacagttcttaatgaatggatcgttccttgattggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA

Basic information

species Physcomitrella patens
transcript PP1S219_50V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT3G04840.1 (Arabidopsis thaliana), 3'ss of exon 4
---------tgttgttggaaaaaggaaatatcgtggaatatgtctgtatgtttcggggtaagagtgaggacagttcttaatgaa-tggatcgttcctt--gattggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA
           |||||| ||| |   | |  | |  | ||  ||||    ||  ||   || |     ||   |  ||   ||  | ||  |||  ||   ||   || |||||||||||| |||||||||| || ||  | || || ||    |||||||||| ||||||||||||||| ||||| || || ||||| ||||  ||||   
gtaaggatagtttgttgtaaacattgatttacatc-agtaattctggtcatt--ggttaaaaaacccagattatggttgtggagcttgactgttttttttaatcatctttagGGCATGGACTTCACCACCGATAAACTTAGGTCATTGGTTAAGAAGTGGCAGACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGACAGTTACACTC

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 3'ss of exon 4
--tgttgt-tggaaaaaggaaatatcgtggaatatgtctgtatgtttcggggtaagagtgaggacagttcttaatga-atggatcgttccttgattggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA
      |   |  |  || |     || ||    ||| |        |   | |    |       |  |   |||   | |  |  ||   |||  ||   ||||||||||| |||| || ||||||||||||||  | || || ||||||||||   |||| ||||| ||||| |||||||||||||| |||  |||||   
cccacagcgcgttaccagcagggggcgggggtcctgtgtaggcagg-caatgcaccgattgacctggcccgccatgttgtcgtgccctctgcgatccgc---agGGCATGGACTTCACTACGGACAAGCTGCGCTCGCTGGTCCGCAAGTGGCAGACCCTGATCGAGGCGCACGTGGACGTGAAGACCACGGACGGCTACACCC

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ09763 (Selaginella moellendorffii), 3'ss of exon 4
tgttgttggaaaaaggaaatatcgtggaatatgtctgtatgtttcggggtaagagtgaggacagttcttaatgaatggatcg--ttccttgattgg------ctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA
                                                |||||||      |  ||||     | ||       ||| ||| ||        ||  |||| |||||| |||| ||||||||||| || ||  | || || |||||||||    | || || ||||||||||| |||||||| |||||||||||||   
------------------------------------------------gtaagagaattttcttttctctccaattgtgctagcttcattgttttcatgttcctgcagGGAATGGACTTCACGACCGACAAGCTCCGGTCTCTCGTCCGGAAGTGGCAGTCCCTCATCGAAGCTCACGTTGATGTGAAGACGACTGACAACTACACCT

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ09804 (Selaginella moellendorffii), 3'ss of exon 4
tgttgttggaaaaaggaaatatcgtggaatatgtctgtatgtttcggggtaagagtgaggacagttcttaatgaatggatcgttccttgattggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA
                       ||   | |  | | | |  |   | |  ||  |     ||||  || ||   |  |   || | || | |  |  |||| |||||| |||| ||||||||||| || ||| | || || |||||||||    | ||||| ||||||||||| |||||||| |||||||||||||   
-----------------------gtaagagaattttcttttctctcgtgctagctt-----cagtatttgattgttccac--tttcatgctcg--tgcagGGAATGGACTTCACGACCGACAAGCTCCGGTCCCTCGTCCGGAAGTGGCAGTCCCTCATTGAAGCTCACGTTGATGTGAAGACGACTGACAACTACACCT

upper sequence: PP1S219_50V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ11589 (Selaginella moellendorffii), 3'ss of exon 4
tgttgttggaaaaaggaaatatcgtggaatatgtctgtatgtttcggggtaagagtgaggacagttcttaatgaatggatcgttccttgattggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA
                                          || | |      ||     |  ||  |  |   |  || |||     | |   |  |||| |||||| |||| ||||||||||| || ||| | || || |||||||||    | ||||| ||||||||||| |||||||| |||||||||||||   
-----------------------------------------gttagagaattttgttttctccttttgtgctagcttcattgttttcatactca-tgcagGGAATGGACTTCACGACCGACAAGCTCCGGTCCCTCGTCCGGAAGTGGCAGTCCCTCATTGAAGCTCACGTTGATGTGAAGACGACTGACAACTACACCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162238339|gb|FC415881.1|FC415881
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162219262|gb|FC395258.1|FC395258
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162266508|gb|FC442544.1|FC442544
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37848007|gb|BJ606015.1|BJ606015
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162269619|gb|FC444850.1|FC444850
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTTCGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162268891|gb|FC445713.1|FC445713
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18331065|gb|BJ163071.1|BJ163071
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18367508|gb|BJ199591.1|BJ199591
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162263546|gb|FC439575.1|FC439575
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162238312|gb|FC415880.1|FC415880
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37844486|gb|BJ602494.1|BJ602494
EST:     GCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAAATTTTTGG                         GGCATGGACCTCACCACCGGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: GCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTAC-AAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACC-GACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
EST: gi|18365501|gb|BJ197578.1|BJ197578
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162280002|gb|FC456188.1|FC456188
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|67571923|gb|BJ944747.1|BJ944747
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37833165|gb|BJ591177.1|BJ591177
EST:     CGAAGATGTCCAGGGCAAGAACGTTCTTACAAAATTTTTGG                         GGCATGGACCTCACCACCNGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: CGAAGATGTCCAGGGCAAGAACGTTCTTAC-AAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACC-GACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
EST: gi|208362470|gb|DC943725.1|DC943725
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162263545|gb|FC439574.1|FC439574
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162260761|gb|FC435413.1|FC435413
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162270425|gb|FC447541.1|FC447541
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37841165|gb|BJ599173.1|BJ599173
EST:     GCCGAAGATGTACAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: GCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37851791|gb|BJ609799.1|BJ609799
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACC-GACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
EST: gi|162266098|gb|FC441847.1|FC441847
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|100445211|gb|BY982840.1|BY982840
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162280003|gb|FC456189.1|FC456189
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162266507|gb|FC442543.1|FC442543
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|67699231|gb|BJ959464.1|BJ959464
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162258377|gb|FC434928.1|FC434928
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|208390671|gb|DC937827.1|DC937827
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162259533|gb|FC435460.1|FC435460
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18339907|gb|BJ171934.1|BJ171934
EST:     TACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: TACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18364001|gb|BJ196074.1|BJ196074
EST:     AGCTGAGGGCCGAAGATGTACAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162268892|gb|FC445714.1|FC445714
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|208386756|gb|DC929202.1|DC929202
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162258378|gb|FC434929.1|FC434929
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162252182|gb|FC425860.1|FC425860
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|67695290|gb|BJ955523.1|BJ955523
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18373981|gb|BJ205559.1|BJ205559
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162266097|gb|FC441846.1|FC441846
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162263260|gb|FC439068.1|FC439068
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162276244|gb|FC452598.1|FC452598
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18371609|gb|BJ203211.1|BJ203211
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTATTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162252181|gb|FC425859.1|FC425859
EST:     GGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: GGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18356012|gb|BJ188071.1|BJ188071
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162260760|gb|FC435412.1|FC435412
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162276243|gb|FC452597.1|FC452597
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|67570168|gb|BJ942992.1|BJ942992
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162259534|gb|FC435461.1|FC435461
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18356228|gb|BJ188287.1|BJ188287
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18360719|gb|BJ192782.1|BJ192782
EST:     AGCTG-GGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18368054|gb|BJ200139.1|BJ200139
EST:     AGCTG-GGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37842939|gb|BJ600947.1|BJ600947
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACC-GACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
EST: gi|18347464|gb|BJ179510.1|BJ179510
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162269620|gb|FC444851.1|FC444851
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162265018|gb|FC441521.1|FC441521
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|208365423|gb|DC950890.1|DC950890
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|18373990|gb|BJ205568.1|BJ205568
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|162270426|gb|FC447542.1|FC447542
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37851720|gb|BJ609728.1|BJ609728
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCA-CCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
EST: gi|37844498|gb|BJ602506.1|BJ602506
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCNGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACC-GACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
EST: gi|162265017|gb|FC441520.1|FC441520
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAG
EST: gi|37843987|gb|BJ601995.1|BJ601995
EST:     AGCTGAGGNCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACC-GACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
EST: gi|37832956|gb|BJ590968.1|BJ590968
EST:     AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGG                         GGCATGGACCTCACCACCGGACAAGCTGCGCTCCTTAGTACGAAAGTGGCA
genomic: AGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACC-GACAAGCTGCGCTCCTTAGTACGAAAGTGGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 121

CTCGTTAGCCGACTTGCAGAATGATGAAGATCAGGCTTTCCGCAAAATCAAGCTGAGGGCCGAAGATGTCCAGGGCAAGAACGTTCTTACAAATTTTTGGgtatgggcca ... ttggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggtaagagtgaggacagttcttaatgaatggatcgttccttgattggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA
                      ttaatgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttgttggaaaaaggaaatatcgtggaatatgtctgtatgtttcggggtaagagtgaggacagttcttaatgaatggatcgttccttgattggctctagGGCATGGACCTCACCACCGACAAGCTGCGCTCCTTAGTACGAAAGTGGCAGAGTTTGATTGAGGCTCACGTTGACGTGAAGACCACTGACAACTACATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA