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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG

Basic information

species Physcomitrella patens
transcript PP1S215_81V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os07g07719.1 (Oryza sativa), 3'ss of exon 2
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattc---ttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
        ||| |  | |   || || |  |  |||  || | ||   ||| |      |||| ||||    || |  |  | ||   ||  || |  | |||||||||||||||||| ||||||||||||||  | ||||| ||||| |||||||||||||| |||||  |  | |||  ||| || ||||| || ||||||
-cgaggctttggactgctaacttctttgggctaattaattgcattctcagagttgaacaaattgctctttgatttc--atttgaactaccttttgtaattcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGTGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os07g07770.1 (Oryza sativa), 3'ss of exon 2
--tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatca----atggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
    |  || ||||||   |||     | | ||| |||    | |  | |    | | || ||||   || |   || ||||     ||  |   || |  | |||||||||||||||||| ||||||||||||||  | ||||| ||||| |||||||||||||| |||||  |  | |||  ||| || ||||| || ||||||
cgagtactttttgtat---tctcacagttgaacaaattgcgctttgatttca--tttgaactactacgat-taattgtaatcgaaccatatctttttgtaattcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGTGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os07g07709.1 (Oryza sativa), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacac-attcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
| ||| | |    |   ||    |    || |  ||  |  ||    |  ||     |  |   ||||  |   |  ||  | |  |   || |  |||||||||||||||||||| ||||||||||||||  | ||||| || || |||||||||||||| |||||  |  | |||  ||| || ||||| || ||||||
tgtttctttcagcttactcccaataatctagattataataatcccaagctgaaagaaacatggcctaagttgaatcgaactactc-cattttgtaatgcagGAACCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACTACTGGCAGGAGGGGAAAGACTGTCGGTGTCTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 3
---tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
   | ||   |  | ||  ||| | | || |  | | ||   || | |||   ||  || |       |       ||   ||| | |   ||| |    ||||||||||||||||||  | |||||||||||| | ||||| ||||| ||||||||||||||||| ||| |  | ||   ||| || |||||||| ||||||
gtttgttacccaggcattcatcatgtattggatccctttaacttatgttgaccatcttttacgctctcatcacccttgcgctcacttgttccttgta---cagGAACCACCGTGGTCTGAGGCACTACTGGGGCCTCCGTGTGCGTGGGCAGCACACCAAGACAACCGGAAGGAGGGGTAAGACTGTCGGTGTGTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G130544_T02 (Zea mays), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatc---aatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
  |   |  || |  | |||    |    |  | | | |      |  |   ||||| |||   || |    | ||  |    | |      || |  |||||||||||||||||||| ||||||||||||||| | || || ||||| |||||||||||||| |||||  | ||||||  |||||||||||| || ||||||
-gtccattgtgcactg-tctacactctacattcttgcatcgagaatacatgatctta-ttatcgtagtagcccagaccttcagatttttaatttgttctgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGCGTCCGTGGCCAGCACACCAAGACTACTGGTAGGCGTGGAAAGACCGTTGGTGTCTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G178341_T02 (Zea mays), 3'ss of exon 2
------tttttttcttgtat-ggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
      |    |||   | |   || ||| | |  | ||  |  || | || ||||| | || | |||    |  ||  |  | ||      |  |||   ||||||||||||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||||| |||||  | || |||   || |||||||| || ||||||
tagccgtggccttcaaattttaaatttttgtatgctgcatgtcattgt-ttatgtagttcctaagtta----acagtcac--atattcgcatcttcttggtttgcagGAACCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGTCCGTGGCCAGCACACCAAGACCACTGGCAGGCGCGGAAAAACTGTTGGTGTCTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G062911_T01 (Zea mays), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacacat-tcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
 ||||   |||| |   |   | ||   | ||| | ||      ||||       ||  |   | |  | |   ||  |   |   ||   | |  | |||||||||||| ||||| |||||||||| |||| ||||||| | ||| |||||||||||||| |||||| | ||||||  ||| ||||||||||| ||||||
-ttttcatttgtgttcgtaactgttatatgcacttctcccaaaatttgcttgcggtttgtagttgtgttttgtatgcgacacagaaccttgtgttatccagGAACCACCGAGGTCTCCGTCACTACTAGGGCCTGCGTGTCCATGGCCAGCACACCAAGACTACTGGAAGGCGTGGAAAGACTGTTGGTGTGTCAAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA10G36610.2 (Glycine max), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattact--ctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
 || ||  |   ||   | ||    ||   ||   | | | | ||  | ||||   ||  | |  |||| |   |||||||      |    |||  ||||| |||||||||||| |  | || ||||||||| | ||||| ||||| |||||||||||||| ||||| ||| | |||  ||| |||||||| |||||||||
-ttgttaataaaatccttgttgccctcaagcattgtgtatgcattgtttgattgaaaaacattggctaacga-actgaaattgtatccttactattatgcagAAACCACCGTGGTTTGAGGCATTACTGGGGCCTTCGTGTCCGTGGTCAGCACACCAAGACTACTGGCCGTAGGGGAAAGACTGTTGGTGTCTCTAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA20G30970.1 (Glycine max), 3'ss of exon 3
---tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
     || |  ||||    |  ||||| | ||   |||| | | | |   || |    || |  ||  ||||      ||||||    ||   |||  ||||| |||||||||||| |  | |||||||||||| | ||||| ||||| |||||||||||||| ||||| ||  | |||  ||| ||||| || |||||||||
taaaattctggttgtcctcagatttttgt-gtgggcattgtctgcctgattaaaaaaatattggct--aatgagctgaaaatcatatccctactattatgcagAAACCACCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTCCGTGGTCAGCACACCAAGACTACTGGCCGCAGGGGAAAGACTGTTGGGGTCTCTAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA10G36880.2 (Glycine max), 3'ss of exon 3
----tttttttcttgtatggatct-ttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
     ||| || |  ||   |  | |       ||   |  |   | |    |   ||  || | | || ||||    ||| ||  ||    || |     |||||||||| |||||| |  | |||||||||||  | ||||||||||| ||||| |||||||| ||||| ||| | ||    || ||||||||||| ||||||
cttcatttgttttcataaaaacgtatagaaatatatggaaacacatgtcaaattactttctattaaatccaatgaaattgatatttatacttgcat-----gcagGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT1G22780.1 (Arabidopsis thaliana), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattctta-attactctaatgttgctgaaatcaatggccgctt--atgttg-cagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
      |  | ||  |||   |  || ||     |  | || || ||   ||   || |  ||| |  |  | ||||     || | | ||   ||||   ||| ||||| ||||||||  | |||||||||||  | ||||||||||||||||||||||| || || ||||| ||||||  ||| |||||||| || ||||||
----aatgatttactgatgcatcctttgtttctctcttgttgttctgataatcgatatagaactttgtttgtactgactgagattgtcactgtaatgtaaacagAAACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTACGTGGACAGCACACCAAAACCACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacacat-tcttttcttttgtagattct-taattactctaatgttgctgaaatcaatggccgcttatgttg--cagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
   |   |   |  |    || |  || ||  ||| |    |  |   ||  | || ||    || ||||  || ||   |         ||||   ||  ||| ||||| ||||||||  | || ||||||||  | ||||| |||||||| ||||||||||||||||| ||  | |||  ||| ||||||||||||||||||
--gtaaacccattagtcatttctgatcctaatcatataacatgataaatatgtcctctaggggctttaataatggtggttttg-cattttcttacaatgaacagAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGGACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaat----gttgctgaaatcaatggccgcttatgttg-cagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
     | || ||  | ||    |  |  |   || |   |   | |  |  |  |||       | ||    |  | | | |   ||  |   ||   | | ||||||||||||||||||||| |||||||||||  | |||||||| ||||| ||||||||||||||||| ||  | ||    || |||||||| || || |||
-----tgctcgtgagcattgcctacttattttcactgcatatgtatccatctgtttataagaggtgataggggcagttaacactgatatcattttcaatggacagGAACCACCGTGGTCTTCGACACTACTGGGGTCTACGTGTACGCGGACAACACACCAAGACAACTGGCCGCAGAGGGAAAACTGTTGGTGTCTCAAAAAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv18s0072g00060.t01 (Vitis vinifera), 3'ss of exon 4
---------tttttttcttgtatggatctttttttcgtacacattcttttcttt-tgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
         | |   |  | | |||   |   ||  | |   | | |   ||   ||  ||  | | || ||| | |    ||| |  |  ||       | |  ||||||||||||||||||||  | |||||||||||| | ||||| || || |||||||||||||| || || ||| | |||  ||| |||||||| |||||||||
agggcaccgtgtccattgtttgtggtagtaggttgtgaatgaagtttaggctaggtggggaaacatgat-actttca----gctaatcttgata-----ctgttatgcagGAACCACCGTGGTCTGAGGCACTACTGGGGCCTCCGTGTTCGCGGCCAGCACACCAAGACCACAGGTCGTAGAGGAAAGACTGTTGGTGTCTCTAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 3
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
                                ||  |  || ||        | | |||  ||      | | || | | | |      || | |  |||||||||||||||||||||||||||||||||  |||| || || || |||||||||||||| || ||||| |||||| | ||||| || || || ||||||
-------------------------------gcaagccgtttttcc-----ctttcaatctcttggggatggatggattgacttctttattgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCACACCAAGACCACCGGACGCCGTGGAAGAACCGTGGGAGTCTCCAAGAAG

upper sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ25542 (Selaginella moellendorffii), 3'ss of exon 4
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgct-tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
 |           | ||     |         ||  |    | ||| |   || | |||  ||      | | || | | | | |  | | | |     ||| ||||||||||||||||||||||||||||  |||| || || || |||||||||||||| || | ||| |||||| | ||||| || || || ||||| 
ctcagggacgacctcgagaggctcaagaagatcaggcaagccattttttcctt-tcaatctcttacggatggatggattgacttgaggttatcttccttagGGACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCACACCAAGACCACCGAACGCCGTGGAAGAACCGTGGGAGTCTCCAAGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162253990|gb|FC430221.1|FC430221
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18330539|gb|BJ162545.1|BJ162545
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|67508620|gb|BJ941482.1|BJ941482
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162212757|gb|FC388557.1|FC388557
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162210620|gb|FC386308.1|FC386308
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162264365|gb|FC440531.1|FC440531
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162234042|gb|FC410724.1|FC410724
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162243512|gb|FC420632.1|FC420632
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162208358|gb|FC384670.1|FC384670
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|19790570|gb|BQ041941.1|BQ041941
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAATATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|67691839|gb|BJ952072.1|BJ952072
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162206565|gb|FC382934.1|FC382934
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18336509|gb|BJ168531.1|BJ168531
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|19788983|gb|BQ041032.1|BQ041032
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162261494|gb|FC438330.1|FC438330
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|19785303|gb|BQ040298.1|BQ040298
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162201991|gb|FC377197.1|FC377197
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|37824978|gb|BJ583044.1|BJ583044
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18335100|gb|BJ167118.1|BJ167118
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|37844488|gb|BJ602496.1|BJ602496
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCGG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162263767|gb|FC439647.1|FC439647
EST:     GCTTTGGACATGAAGCTGAGGGATGATTTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTTTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|67718206|gb|BJ968465.1|BJ968465
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18341523|gb|BJ173558.1|BJ173558
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|19782112|gb|BQ039812.1|BQ039812
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18345865|gb|BJ177908.1|BJ177908
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18375221|gb|BJ206799.1|BJ206799
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGC
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACC-GTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGC
EST: gi|162206564|gb|FC382933.1|FC382933
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162264364|gb|FC440530.1|FC440530
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|67691546|gb|BJ951779.1|BJ951779
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|208378036|gb|DC914385.1|DC914385
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162263346|gb|FC438595.1|FC438595
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18328270|gb|BJ160274.1|BJ160274
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162271890|gb|FC448100.1|FC448100
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|15327335|gb|BI487947.1|BI487947
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162263768|gb|FC439648.1|FC439648
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|67726692|gb|BJ976951.1|BJ976951
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|19790285|gb|BQ041800.1|BQ041800
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18337077|gb|BJ169101.1|BJ169101
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162248121|gb|FC420841.1|FC420841
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162261495|gb|FC438331.1|FC438331
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162210621|gb|FC386309.1|FC386309
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18373983|gb|BJ205561.1|BJ205561
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCGG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162262456|gb|FC439499.1|FC439499
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|19789538|gb|BQ041366.1|BQ041366
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGTGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|18331563|gb|BJ163574.1|BJ163574
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162244240|gb|FC419839.1|FC419839
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162206592|gb|FC382350.1|FC382350
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|208387492|gb|DC933355.1|DC933355
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162264394|gb|FC440560.1|FC440560
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162248122|gb|FC420842.1|FC420842
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|37849277|gb|BJ607285.1|BJ607285
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|19790144|gb|BQ041716.1|BQ041716
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGTGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|67508331|gb|BJ941199.1|BJ941199
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162199889|gb|FC376455.1|FC376455
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|208368935|gb|DC947493.1|DC947493
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162230772|gb|FC406403.1|FC406403
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|37829844|gb|BJ587856.1|BJ587856
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
EST: gi|162201992|gb|FC377198.1|FC377198
EST:     GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAG                         GAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA
genomic: GCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 67

ACAGAAAGAAAGACCACAAGGATGGTCGTTTCTCCCAGGTTGTTTCTAACGCTTTGGACATGAAGCTGAGGGATGATCTGGAGCGTCTCAAGAAGATCAGgtatggggaa ... tatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG
                ctctaat  putative branch site (score: 67)
         ttaattactctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttttttcttgtatggatctttttttcgtacacattcttttcttttgtagattcttaattactctaatgttgctgaaatcaatggccgcttatgttgcagGAACCACCGTGGTCTTCGTCACTACTGGGGCTTGCGTGTACGTGGACAGCACACCAAGACAACTGGACGTCGTGGACGGACCGTTGGTGTGTCTAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa