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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctatccaaaaggtcccgcccttcttgctaaattgcaactgatgaaaccttggaccagattttgatgttgacagaatgtcaattgggttgagtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTCAATATTGCTTTAGATGATGTGTCTATCACCAATTTGACTTTTGGGCGGG

Basic information

species Physcomitrella patens
transcript PP1S215_63V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208398186|gb|DC908415.1|DC908415
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|208377915|gb|DC906886.1|DC906886
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|100391953|gb|BY989628.1|BY989628
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|208399562|gb|DC908559.1|DC908559
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|7067262|gb|AW497117.1|AW497117
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|208370874|gb|DC936222.1|DC936222
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|208391371|gb|DC942143.1|DC942143
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|208399465|gb|DC908462.1|DC908462
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|208358765|gb|DC935179.1|DC935179
EST:     AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: AAGCAGTTGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
EST: gi|19788927|gb|BQ041002.1|BQ041002
EST:     TGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAG                         GTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC
genomic: TGTTGCTCAATATAACGCTAGCCAACTTATCACGCAACGTGAGgtagacttca ... agtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccttggaccagattttgatgttgacagaatgtcaattgggttgagtttgtcagGTGGTCAGCAGGGAGATTCGGAGAATTTTGCAGGAGCGTGCTCTGAGCTTCAATATTGCTTTAGATGATGTGTCTATCACCAATTTGACTTTTGGGCGGG
                    tgttgac  putative branch site (score: 3)
             attttgat  TA-rich tract