Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcagccgctggtggcagaaacattcctggattctggtgcatttcttgtgtgcgacttgtagggtgttgtggggatgttttgcggtgtcttgggctgtggttggtttgtcttctttttaaaatgtgtgtatgtgtgtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGTCTGTTGGAACACACGGACGTGGCGGTGCTGTTGGACAATGAAGCAATTT

Basic information

species Physcomitrella patens
transcript PP1S215_51V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S215_52V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g11970.1 (Oryza sativa), 3'ss of exon 3
gtgcgcagccgctggtggcagaaacattcctggattctggtgcatttcttgtgtgcgacttgtagggtgttgtggggatgttttgcggtgtcttgggctgtggttggtttgtcttctttttaaaatgtgtgtatgtgtgtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGTCTGTTGGAACACACGGACGTGGCGGTGCTGTTGGACAATGAAGCAATTT
                                        ||||         ||   | |   |  ||   | | || | |        |  | |    |         |   | |  | ||||    |   |||||||   ||||| | || ||||| || ||||||||||||||||| ||||| |||||||||   ||| | || ||||| ||||| |  || ||  ||||||| || || || |
----------------------------------------tgcaaggtaaacatgtaccctcc-gaatggactagagaagctaaat----ttgtcgatgttaacatacaagctctgtactgaaaaccactccctgtgtgt---tgcagATCTCAACGGCCGTGGTGGAGCCTTACAACAGCGTGCTCTCGACCCACTCCCTGATCGAGCACACCGACGTCGTCGTCCTCCTGGACAACGAGGCCATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181205|gb|FC357325.1|FC357325
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCAC
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCAC
EST: gi|100446794|gb|CJ971093.1|CJ971093
EST:     ATTACGGGAAGAANTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGANCCTTACAACAGTGTGCTT-CNAACCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162206612|gb|FC382370.1|FC382370
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162186522|gb|FC363286.1|FC363286
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|67718619|gb|BJ968878.1|BJ968878
EST:     TACGGGAAGAAGTCTAAGCTGGGAATTCACTATCTACCCGTCTCCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTT
genomic: TACGGGAAGAAGTCTAAGCTGGGA-TTCACTATCTACCCGTCTCCCC-AGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTT
EST: gi|208400231|gb|DC908892.1|DC908892
EST:     ATTACGGGAAGAAGTCTAANCTGGGATTCACTATCTACC-GTCTCCC-AG                         GTGTCTACGGCAGTCGTGGAGC
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGC
EST: gi|162158347|gb|FC334766.1|FC334766
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162154808|gb|FC331122.1|FC331122
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100414519|gb|BY992812.1|BY992812
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGC-TTANCA-CAGTGTGCTTTCGACCCACAG
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTA-CAACAGTGTGCTTTCGACCCACAG
EST: gi|100405010|gb|BY991394.1|BY991394
EST:     TTACGGGAAGAAGTCTAAGCTGGGGAT-CACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: TTACGGGAAGAAGTCTAAGCTGGG-ATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100425228|gb|BY977037.1|BY977037
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTC
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTC
EST: gi|162184171|gb|FC360451.1|FC360451
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100400147|gb|BY990802.1|BY990802
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162155995|gb|FC332752.1|FC332752
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100405307|gb|BY955460.1|BY955460
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGT
EST: gi|100400524|gb|BY954520.1|BY954520
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTAC
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTAC
EST: gi|162150810|gb|FC327082.1|FC327082
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162236616|gb|FC413711.1|FC413711
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162194963|gb|FC369041.1|FC369041
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162192459|gb|FC369115.1|FC369115
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162152656|gb|FC328323.1|FC328323
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100415623|gb|BY992925.1|BY992925
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162229908|gb|FC404361.1|FC404361
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACTCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100446021|gb|CJ970320.1|CJ970320
EST:     ATTACGGGAAGAANTCTAANCTGGGATTCACTATCTACCCGTCTCCCNAG                         GTGTCTACGGCAGTCGTG
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTG
EST: gi|100446436|gb|CJ970735.1|CJ970735
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCC-AG                         GTGTCTACGGCAGTCGTGGANCCTAACAACAGTGTGCTT-CNACCCN-AGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100379813|gb|BY949957.1|BY949957
EST:     TTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCCAG                         -TGTCTACGGCAGTCGTGGAGCCTTTACA-CAGTGTGCTTT
genomic: TTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCC-AGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTT-ACAACAGTGTGCTTT
EST: gi|100445683|gb|CJ969982.1|CJ969982
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGANCCTTACAACAGTGTGCTTNCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|208390350|gb|DC933395.1|DC933395
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCC-AG                         GTGTCTACGGCAGTCGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGT
EST: gi|67718852|gb|BJ969111.1|BJ969111
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACA
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACA
EST: gi|100364753|gb|BY947891.1|BY947891
EST:     TTACGGGGAGAAGTCTAAAGCTGGGAT-CACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACNACAGTGTGCTTTCGACCCACA
genomic: TTACGGGAAGAAGTCTAA-GCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACA
EST: gi|162161587|gb|FC338794.1|FC338794
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162149805|gb|FC325920.1|FC325920
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTT
EST: gi|162164963|gb|FC342154.1|FC342154
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100381455|gb|BY950106.1|BY950106
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTANCA-CAGTGTGCTTTCGACCCACAG
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTA-CAACAGTGTGCTTTCGACCCACAG
EST: gi|162192537|gb|FC369141.1|FC369141
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162198808|gb|FC374291.1|FC374291
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162171234|gb|FC347198.1|FC347198
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGT
EST: gi|162160033|gb|FC335695.1|FC335695
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|162190004|gb|FC366578.1|FC366578
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100447111|gb|CJ971410.1|CJ971410
EST:     ATTACGGGAAGAANTCTAAGCTGGGATTCACTATCTACCCGTCTCCC-AG                         GTGTCTACGGCAGTCGTGGAGCNT-ACA-CAGTGTGCTTNCAACCC-CAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|208361598|gb|DC942841.1|DC942841
EST:     ATTACAGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAN                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTNCC-ANCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100413004|gb|BY992541.1|BY992541
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|208373883|gb|DC936626.1|DC936626
EST:     ATTACGGGAAGAANTCTAAGCTGGGATTCACTATCTACCCGTCTCCC-AG                         GTGTCTACGGCAGTCNTGGANCCTAACA-CAGTGTGCTT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTT
EST: gi|208346319|gb|DC905266.1|DC905266
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCC-AG                         GTGTCTACGGCAGTCGTGGANCCTTACAACAGTGTGCTT-CGACC-ACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100414371|gb|BY992743.1|BY992743
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTTACA-CAGTGTGCTTTC
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTT-ACAACAGTGTGCTTTC
EST: gi|100446856|gb|CJ971155.1|CJ971155
EST:     ATTACGGGAAGAANTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGANCCTAACAACAGTGTGCTT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTT
EST: gi|67718957|gb|BJ969216.1|BJ969216
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTG
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTG
EST: gi|100447299|gb|CJ971598.1|CJ971598
EST:     ATTACGGGAAGAANTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTG
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTG
EST: gi|100402310|gb|BY954772.1|BY954772
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|100396710|gb|BY953788.1|BY953788
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCNTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
EST: gi|208373445|gb|DC941056.1|DC941056
EST:     ATTACGGGAAGAANTCTAAGCTGGGATTCACTATCTACCCGTCTCCC-AG                         GTGTCTACGGCAGTCGTGGA
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGA
EST: gi|100361765|gb|BY947616.1|BY947616
EST:     ATTACGGGAAGAAGTCTAAGCTGGGAT-CACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCTTTTACA-CAGTGTGCTTTCGACCCACAG
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTT-ACAACAGTGTGCTTTCGACCCACAG
EST: gi|100400069|gb|BY990763.1|BY990763
EST:     ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAG                         GTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT
genomic: ATTACGGGAAGAAGTCTAAGCTGGGATTCACTATCTACCCGTCTCCCCAGgtgcgcagcc ... gtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggctgtggttggtttgtcttctttttaaaatgtgtgtatgtgtgtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGTCTGTTGGAACACACGGACGTGGCGGTGCTGTTGGACAATGAAGCAATTT
                  tcttctttttaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcagccgctggtggcagaaacattcctggattctggtgcatttcttgtgtgcgacttgtagggtgttgtggggatgttttgcggtgtcttgggctgtggttggtttgtcttctttttaaaatgtgtgtatgtgtgtgcatgcagGTGTCTACGGCAGTCGTGGAGCCTTACAACAGTGTGCTTTCGACCCACAGTCTGTTGGAACACACGGACGTGGCGGTGCTGTTGGACAATGAAGCAATTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA