1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaagatgtctactctcacgtcgataacatttatttatacccgtagaagtcaatgatctgcctgcttgcatctatacactattgcgcggcacgatatggcatgttttttaaaattttgttgggttgttttgtcagcaatgactgatatttgagtgtcagtgcagTATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGATTATCCAGATCATCTTCAGGGAGAGGCTCCAGGTGACTACGGGTTTGAT
species | Physcomitrella patens |
transcript | PP1S215_109V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGCAGGCGAGGCTCGTGAAGCTCAAAGTAATGTAAGAGATGAGAG TATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGAEST: gi|162262567|gb|FC439753.1|FC439753
genomic: GCTGCAGGCGAGGCTCGTGAAGCTCAAAGTAATGTAAGAGATGAGAGgtaaagatgt ... gtcagtgcagTATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGA
EST: GAAGCTGCAGGCGAGGCTCGTGAAGCTCAAAGTAATGTAAGAGATGAGAG TATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGAEST: gi|162276352|gb|FC452433.1|FC452433
genomic: GAAGCTGCAGGCGAGGCTCGTGAAGCTCAAAGTAATGTAAGAGATGAGAGgtaaagatgt ... gtcagtgcagTATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGA
EST: GAAGCTGCAGGCGAGGCTCGTGAAGCTCAAAGTAATGTAAGAGATGAGAG TATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGA
genomic: GAAGCTGCAGGCGAGGCTCGTGAAGCTCAAAGTAATGTAAGAGATGAGAGgtaaagatgt ... gtcagtgcagTATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGA
aaaattttgttgggttgttttgtcagcaatgactgatatttgagtgtcagtgcagTATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGATTATCCAGATCATCTTCAGGGAGAGGCTCCAGGTGACTACGGGTTTGAT
gactgat putative branch site (score: 3)
tgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagatgtctactctcacgtcgataacatttatttatacccgtagaagtcaatgatctgcctgcttgcatctatacactattgcgcggcacgatatggcatgttttttaaaattttgttgggttgttttgtcagcaatgactgatatttgagtgtcagtgcagTATGTGGTACAGGGAAGGTCGCCCAAAGTGGTTAGGTCCAATACCATATGATTATCCAGATCATCTTCAGGGAGAGGCTCCAGGTGACTACGGGTTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG