Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctcccttgtttcctctcattttgaaattctactacaaagctccggatagagctgtagatggaattctctgctagtgcggaaaaaagcttttcttaaattttaacactaacgcgcttatccttcttgcagCCTCCAAGTTGAATGGTCCGCTTGAAATCGTCACAGCCTACACCGGGCGTGGTCTTTTCTTGTTTCTCAGAGGCTTGGACAAGTTTCTCACATTGTATGA

Basic information

species Physcomitrella patens
transcript PP1S214_66V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162173791|gb|FC349967.1|FC349967
EST:     TCATTGCGGCGTACTATCCTGTTTACAGAGCTGAAGAGGATTGATC                         CCTCCAAGTTGAATGGTCCGCTTGAAATCGTCACAGCCTACACCGGGCGTG
genomic: TCATTGCGGCGTACTATCCTGTTTACAGAGCTGAAGAGGATTGATCgtgagctccc ... cttcttgcagCCTCCAAGTTGAATGGTCCGCTTGAAATCGTCACAGCCTACACCGGGCGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcggaaaaaagcttttcttaaattttaacactaacgcgcttatccttcttgcagCCTCCAAGTTGAATGGTCCGCTTGAAATCGTCACAGCCTACACCGGGCGTGGTCTTTTCTTGTTTCTCAGAGGCTTGGACAAGTTTCTCACATTGTATGA
                             cactaac  putative branch site (score: 1)
                                     cgcttatccttctt  CT-rich tract
     aaaaaagcttttctta  TA-rich tract