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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtactttcataaagaaaatttaaactattattatctaatgtggaacttaaattcggtttggatcaccattttggaagctgattttggataatgtgcagGTTATGAATCTGATAGGTGATGTGCACGGGAAAGTGGCCGTGATGGTAGACGATATGATTGATACTGCTG

Basic information

species Physcomitrella patens
transcript PP1S212_43V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S212_43V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv02s0012g00530.t01 (Vitis vinifera), 3'ss of exon 5
------atgtactttcataaagaaaatttaaactattattatctaatgtggaacttaaattcggtttggatcaccattttggaagctgattttggataatgtgcagGTTATGAATCTGATAGGTGATGTGCACGGGAAAGTGGCCGTGATGGTAGACGATATGATTGATACTGCTG
          |  |  ||  | | |  || || | || || | |  |    |  | | ||    ||        ||  |  | |  |  | ||   ||   | ||||| ||||||||||| ||||||||  | || ||||| || || ||||| || || ||||||||||||||||
agctttgaagatatggatggaaagatgttgaattctt-ttctttgttactta--tgagatgtcattcctggagtcaagtctgtatttattgtt---taccttacagGTGATGAATCTGATTGGTGATGTCAAAGGAAAAGTTGCAGTCATGGTGGATGACATGATTGATACTGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttaaattcggtttggatcaccattttggaagctgattttggataatgtgcagGTTATGAATCTGATAGGTGATGTGCACGGGAAAGTGGCCGTGATGGTAGACGATATGATTGATACTGCTG
                                agctgat  putative branch site (score: 4)
                                   tgatttt  TA-rich tract