1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctggcaatgagctattagggagcaataacctttcagttccttctctccattaaactcctgtgtatatcgcaatgcgttggtgctttctttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT
species | Physcomitrella patens |
transcript | PP1S205_59V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162165614|gb|FC341453.1|FC341453
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|208376776|gb|DC918731.1|DC918731
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162200281|gb|FC376322.1|FC376322
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162200282|gb|FC376323.1|FC376323
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162255054|gb|FC430927.1|FC430927
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162258767|gb|FC434566.1|FC434566
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162168295|gb|FC344609.1|FC344609
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|67695588|gb|BJ955821.1|BJ955821
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: TGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|67693124|gb|BJ953357.1|BJ953357
genomic: TGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162165615|gb|FC341454.1|FC341454
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162248720|gb|FC424573.1|FC424573
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: ACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162258766|gb|FC434565.1|FC434565
genomic: ACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|162181475|gb|FC358089.1|FC358089
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|208400638|gb|DC904838.1|DC904838
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGAAGGAA-AANCCACTGGTGTACTTGEST: gi|162168296|gb|FC344610.1|FC344610
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|208394748|gb|DC924079.1|DC924079
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|100387062|gb|BY951461.1|BY951461
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGEST: gi|37849627|gb|BJ607635.1|BJ607635
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
EST: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAG ACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
genomic: CCCAGTTGGACTTTGACCGGTGCTTTGCAAGCCCTATTACTCGAGCAAAGgtgggcaaat ... ttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTG
tctccattaaactcctgtgtatatcgcaatgcgttggtgctttctttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT
ctttgat putative branch site (score: 5)
tgctttcttt CT-rich tract
attaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctggcaatgagctattagggagcaataacctttcagttccttctctccattaaactcctgtgtatatcgcaatgcgttggtgctttctttgatgacagACCAGTGCAGAATTGATTTGGGAAGGGAGGGAGAAGCCACTGGTGTACTTGGACACATTGCGAGAGGCTAACCTCCATTTTCTTGAGGGCATGCTGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG