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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagtgtccacaagattgtagtgatgcagaatcattttgcgtggattgcatttggtcgcacagaagatgtggttcctgacaggacgctttggattgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATTCGAGTCCGTGACTCTCTTTCCCAGTTGGACTTTGACCGGTGCTTTGCAA

Basic information

species Physcomitrella patens
transcript PP1S205_59V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208381557|gb|DC923143.1|DC923143
EST:     GTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGNTCAGACNAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: GTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|162165614|gb|FC341453.1|FC341453
EST:     ATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: ATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|208376776|gb|DC918731.1|DC918731
EST:     TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|162200281|gb|FC376322.1|FC376322
EST:     GTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: GTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|162200282|gb|FC376323.1|FC376323
EST:     TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|67693124|gb|BJ953357.1|BJ953357
EST:     TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|162165615|gb|FC341454.1|FC341454
EST:     TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|162181475|gb|FC358089.1|FC358089
EST:     TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|162168296|gb|FC344610.1|FC344610
EST:     TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAA                         GGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
genomic: TTCTCGTCCGTCATGGTCTCAGCTCCTGGAATGAAGAAGGTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT
EST: gi|208394748|gb|DC924079.1|DC924079
EST:     GTCGAGTGCAA                         GGAAGNTCAGACCAATCCGTACTCTTTGATGTAGGAAAACTGCCAGCGATT
genomic: GTCGAGTGCAAgttaagtgtc ... ttgacaacagGGAAGCTCAGACAAATCCGTACTCTCTGATGTAGGAAAACTGCAAGCGATT