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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttggttttcccttctcaaggcaaggtatcttatgtgaaggcattgtcaactcacgaagtacataagagtatattcgaggtagaagctgtttgtgcccactttaattttaatttggtcatttacctaattagcatgtctggttgtagGAATTTACCGAGCGATGGGAAGTAGATCGATATCTTAGTACTGGAGGTTATTTAGGTGAGAATGCTCGCCCTTTCTTTGTGGCTTTGCCCAAAAATGGAG

Basic information

species Physcomitrella patens
transcript PP1S202_11V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100426224|gb|BY958790.1|BY958790
EST:     CCCTGCAACGTACTATCGTGATGGTTTCAAAGTTTGATAACCGTCTGAAG                         GA-TTTACCGAGCGATGGGAAGTAGATCGATATCTTAGTACTGGAGGTTAT
genomic: CCCTGCAACGTACTATCGTGATGGTTTCAAAGTTTGATAACCGTCTGAAGgtacatttgg ... ctggttgtagGAATTTACCGAGCGATGGGAAGTAGATCGATATCTTAGTACTGGAGGTTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcccactttaattttaatttggtcatttacctaattagcatgtctggttgtagGAATTTACCGAGCGATGGGAAGTAGATCGATATCTTAGTACTGGAGGTTATTTAGGTGAGAATGCTCGCCCTTTCTTTGTGGCTTTGCCCAAAAATGGAG
                              acctaat  putative branch site (score: 3)
        tttaattttaatttgg  TA-rich tract