Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaccgagatagcacagaacgagatcgtcacggtccctcgacttgctctcaaggataaagtaccttcacctaattcagtccttttgtctttgattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGACACAGAAGGCAAGTCTTCGAGAAGCCTACAGCAAGAAGAAGTTCCTTCCC

Basic information

species Physcomitrella patens
transcript PP1S1_489V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_489V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA10G05270.1 (Glycine max), 3'ss of exon 2
----------------------------------------gaccgagatagcacagaacgagatcgtcacg---gtccctcgacttgctctcaaggataaa---gtaccttcaccta---attcagtccttttgtctttgattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGACACAGAAGGCAAGTCTTCGAGAAGCCTACAGCAAGAAGAAGTTCCTTCCC
                                         | ||| || ||     |  | ||    |      | | |  |  |      |   ||| |    ||  |  |  ||   ||  |    |||| |  ||  |||| |||||||||||| |||||||| ||||| ||||| ||||| || ||||| || |  ||||| ||    ||  |||| || ||||  ||||||||||   | |||
gtattgtagtgattattgttatgcgggaatcgcgttttgtaaacgaaatggcgtttgaatatatatatatatatatacatatatatatatatatatatatatatatatatgtatgtatgtatgtatgtatttttttattttttttgcagCAAGGTGGTGAGGCTTTCGATAGCGCAGGTTTTGACGGTTATTTCCCAAAAGCAGAAAGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162241794|gb|FC418049.1|FC418049
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18354554|gb|BJ186611.1|BJ186611
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|67722592|gb|BJ972851.1|BJ972851
EST:     TAAAGTGACCGGGGGTGCGCCGAACAAGTTGTTTNAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|22133059|gb|BQ827524.1|BQ827524
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGG
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGG
EST: gi|37835950|gb|BJ593962.1|BJ593962
EST:     TTGAGAGTTGNTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|7147721|gb|AW509586.1|AW509586
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|67699814|gb|BJ960047.1|BJ960047
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|7286496|gb|AW598983.1|AW598983
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|208379526|gb|DC911137.1|DC911137
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37826607|gb|BJ584619.1|BJ584619
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162253359|gb|FC429785.1|FC429785
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37840235|gb|BJ598243.1|BJ598243
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162207763|gb|FC383848.1|FC383848
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18362518|gb|BJ194588.1|BJ194588
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37828619|gb|BJ586631.1|BJ586631
EST:     TTGAGAGTTGNTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTNTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTNTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37841368|gb|BJ599376.1|BJ599376
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|67704082|gb|BJ964315.1|BJ964315
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18373127|gb|BJ204729.1|BJ204729
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162206828|gb|FC382690.1|FC382690
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|208400306|gb|DC924944.1|DC924944
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37829418|gb|BJ587430.1|BJ587430
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18348983|gb|BJ181032.1|BJ181032
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162249736|gb|FC425615.1|FC425615
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162201613|gb|FC378275.1|FC378275
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|67572130|gb|BJ944954.1|BJ944954
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37843649|gb|BJ601657.1|BJ601657
EST:     TNGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37828742|gb|BJ586754.1|BJ586754
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162203065|gb|FC380137.1|FC380137
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162209802|gb|FC385736.1|FC385736
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|67576303|gb|BJ949127.1|BJ949127
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|208346684|gb|DC913330.1|DC913330
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18363018|gb|BJ195090.1|BJ195090
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|15262009|gb|BI437319.1|BI437319
EST:     TGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|19790251|gb|BQ041774.1|BQ041774
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162233066|gb|FC408473.1|FC408473
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162219025|gb|FC394920.1|FC394920
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|67695496|gb|BJ955729.1|BJ955729
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|37839792|gb|BJ597800.1|BJ597800
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162211961|gb|FC388041.1|FC388041
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|67573978|gb|BJ946802.1|BJ946802
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162240218|gb|FC418345.1|FC418345
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162260996|gb|FC437416.1|FC437416
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162232000|gb|FC409074.1|FC409074
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162230936|gb|FC407191.1|FC407191
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|208379596|gb|DC927093.1|DC927093
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|22132938|gb|BQ827449.1|BQ827449
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18349777|gb|BJ181827.1|BJ181827
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162253358|gb|FC429784.1|FC429784
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTTTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTTTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|162212786|gb|FC388586.1|FC388586
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18349657|gb|BJ181707.1|BJ181707
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCNNTAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
EST: gi|18364283|gb|BJ196356.1|BJ196356
EST:     TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGAT                         CAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC
genomic: TTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 87

TTGAAGGAGTTGAAAGCCGAGCTCGCTGCCTTGAGAGTTGCTAAAGTGACCGGGGGTGCGCCGAACAAGTTGTCTAAGATgtacgttctc ... gattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGACACAGAAGGCAAGTCTTCGAGAAGCCTACAGCAAGAAGAAGTTCCTTCCC




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaaggataaagtaccttcacctaattcagtccttttgtctttgattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGACACAGAAGGCAAGTCTTCGAGAAGCCTACAGCAAGAAGAAGTTCCTTCCC
                                tccttttgtctttg  CT-rich tract
                                          tttgatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaccgagatagcacagaacgagatcgtcacggtccctcgacttgctctcaaggataaagtaccttcacctaattcagtccttttgtctttgattttacagCAAGGTGGTTAGGCTTTCAATAGCCCAGGTGTTGACTGTCATTTCTCAGACACAGAAGGCAAGTCTTCGAGAAGCCTACAGCAAGAAGAAGTTCCTTCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT