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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccagcacacgagaacagaatcacgtaaaatgacatgttgattgagtgtgagattcatttgacacaccggctatggaaactgcagtgcagcggttctccgattcatacatactcattggtggtcgttgtgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTGGAAGAGTGACACTGTTACCGCAGTGGTTGTGCCTTCATGGATCAACAGT

Basic information

species Physcomitrella patens
transcript PP1S19_25V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194628|gb|FC370019.1|FC370019
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162193141|gb|FC369940.1|FC369940
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|208361239|gb|DC957708.1|DC957708
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162160526|gb|FC336916.1|FC336916
EST:     GAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162218630|gb|FC394596.1|FC394596
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162251241|gb|FC428520.1|FC428520
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|37841352|gb|BJ599360.1|BJ599360
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162152749|gb|FC329755.1|FC329755
EST:     CTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: CTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162230119|gb|FC406267.1|FC406267
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162193142|gb|FC369941.1|FC369941
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|37827132|gb|BJ585144.1|BJ585144
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|19779084|gb|BQ039402.1|BQ039402
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162167405|gb|FC343108.1|FC343108
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162218631|gb|FC394597.1|FC394597
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162247467|gb|FC425033.1|FC425033
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162199499|gb|FC373788.1|FC373788
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162211026|gb|FC387332.1|FC387332
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162154502|gb|FC330504.1|FC330504
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162175133|gb|FC351994.1|FC351994
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162225455|gb|FC400908.1|FC400908
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162162488|gb|FC338387.1|FC338387
EST:     CACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: CACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162194629|gb|FC370020.1|FC370020
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162179784|gb|FC356375.1|FC356375
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|18340979|gb|BJ173011.1|BJ173011
EST:     ATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: ATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|67692904|gb|BJ953137.1|BJ953137
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162235996|gb|FC412155.1|FC412155
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162153217|gb|FC328999.1|FC328999
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162275971|gb|FC452039.1|FC452039
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162165213|gb|FC341182.1|FC341182
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162217017|gb|FC393317.1|FC393317
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162195347|gb|FC369815.1|FC369815
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162227895|gb|FC403703.1|FC403703
EST:     TTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: TTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|67700201|gb|BJ960434.1|BJ960434
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162179395|gb|FC355395.1|FC355395
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|18337905|gb|BJ169929.1|BJ169929
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162211025|gb|FC387331.1|FC387331
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162199500|gb|FC373789.1|FC373789
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|37839127|gb|BJ597135.1|BJ597135
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162153218|gb|FC329000.1|FC329000
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162225454|gb|FC400907.1|FC400907
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162235995|gb|FC412154.1|FC412154
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162177850|gb|FC355100.1|FC355100
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162167006|gb|FC342468.1|FC342468
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162214588|gb|FC390619.1|FC390619
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162230118|gb|FC406266.1|FC406266
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|67695006|gb|BJ955239.1|BJ955239
EST:     GTCGCCTTGGTGAAGCAACCAG                         ANCAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGT
genomic: GTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagA-CAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGT
EST: gi|19776845|gb|BQ039127.1|BQ039127
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162247466|gb|FC425032.1|FC425032
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162151369|gb|FC327498.1|FC327498
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162179785|gb|FC356376.1|FC356376
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|37837176|gb|BJ595184.1|BJ595184
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162165227|gb|FC341183.1|FC341183
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|15327475|gb|BI488229.1|BI488229
EST:     GCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162253456|gb|FC430090.1|FC430090
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162250027|gb|FC427128.1|FC427128
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162247381|gb|FC423101.1|FC423101
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|37824202|gb|BJ582268.1|BJ582268
EST:     TGAAGCANCCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: TGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|15729191|gb|BI741188.1|BI741188
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162272973|gb|FC449104.1|FC449104
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|19784246|gb|BQ040144.1|BQ040144
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|208346080|gb|DC925507.1|DC925507
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|18338574|gb|BJ170598.1|BJ170598
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162162459|gb|FC338371.1|FC338371
EST:     TTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: TTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162214045|gb|FC389883.1|FC389883
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|37842447|gb|BJ600455.1|BJ600455
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162179396|gb|FC355396.1|FC355396
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162253455|gb|FC430089.1|FC430089
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
EST: gi|162269597|gb|FC444841.1|FC444841
EST:     GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAG                         ACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG
genomic: GGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 42

AGATGCTATACGGACTCAGGGCTTCCCTGGACATGATTCTCAACGAAGAAGGGCTTGATAATGTAATAGCTAGGCACTGTCGCCTTGGTGAAGCAACCAGgtactccagc ... tgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTGGAAGAGTGACACTGTTACCGCAGTGGTTGTGCCTTCATGGATCAACAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgcagcggttctccgattcatacatactcattggtggtcgttgtgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTGGAAGAGTGACACTGTTACCGCAGTGGTTGTGCCTTCATGGATCAACAGT
                 attcata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactccagcacacgagaacagaatcacgtaaaatgacatgttgattgagtgtgagattcatttgacacaccggctatggaaactgcagtgcagcggttctccgattcatacatactcattggtggtcgttgtgttgtgcagACAAGCTGTTAAAGCCTGGGGCCTCACTCTGTGTACACAGGACCCCAAGTGGAAGAGTGACACTGTTACCGCAGTGGTTGTGCCTTCATGGATCAACAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA