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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtctgcattttggactcttttcttgcaaagtgagatcgtctactccccacattttgtcgacatgcgaaatttctaacgtatgattcttctatcgcagGTACCCACCTCATGGACAGCGGACAGCAGTAGTTGAAGAAGGGGTTCAATGGGAGCGCCTTCGTGCCCCACCTGTGGAAACCCCTGCACATGATCTGCAT

Basic information

species Physcomitrella patens
transcript PP1S194_4V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162248455|gb|FC423723.1|FC423723
EST:     TATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAG                         GTACCCACCTCATGGACAGCGGACAGC
genomic: TATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAGgtactgtctg ... tctatcgcagGTACCCACCTCATGGACAGCGGACAGC
EST: gi|162197915|gb|FC373956.1|FC373956
EST:     TATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAG                         GTACCCACCTCATGGACAGCGGACAGCAGTAGTTG
genomic: TATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAGgtactgtctg ... tctatcgcagGTACCCACCTCATGGACAGCGGACAGCAGTAGTTG
EST: gi|67569511|gb|BJ942335.1|BJ942335
EST:     TATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAG                         GTACCCACCTCATGGACAGCGGACAGCAGTAGTTGAAGAAGGGGTTCAATG
genomic: TATGATGCGGAACTGAACTACGATCGTCGAACGGACACATTCAAAGCAAGgtactgtctg ... tctatcgcagGTACCCACCTCATGGACAGCGGACAGCAGTAGTTGAAGAAGGGGTTCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccccacattttgtcgacatgcgaaatttctaacgtatgattcttctatcgcagGTACCCACCTCATGGACAGCGGACAGCAGTAGTTGAAGAAGGGGTTCAATGGGAGCGCCTTCGTGCCCCACCTGTGGAAACCCCTGCACATGATCTGCAT
                            ttctaac  putative branch site (score: 1)
                                         ttcttctatc  putative PPT
                        aaatttctaa  TA-rich tract