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...taactgtcatttgatgcaattccttgccgagtgcacaagtaatattcgcctgacgtatgagaacttatgactattcggacacatatgcaatgaaatgcagAGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCTAAGCATGCTGTGGACGATAATGCGGAAGTTTTAATCGAATGTTGTGATG
species | Physcomitrella patens |
transcript | PP1S18_59V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAG AGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCTEST: gi|18358919|gb|BJ190978.1|BJ190978
genomic: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAGgcacgcattt ... tgaaatgcagAGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCT
EST: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAG AGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAEST: gi|67578552|gb|BJ950719.1|BJ950719
genomic: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAGgcacgcattt ... tgaaatgcagAGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAA
EST: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAG AGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCTEST: gi|162253349|gb|FC429775.1|FC429775
genomic: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAGgcacgcattt ... tgaaatgcagAGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCT
EST: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAG AGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCT
genomic: TAAGATCCAATGGCGGGAGTATGGAACCTGGAAGGTGGAAAGAAATTCAGgcacgcattt ... tgaaatgcagAGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCT
tcgcctgacgtatgagaacttatgactattcggacacatatgcaatgaaatgcagAGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCTAAGCATGCTGTGGACGATAATGCGGAAGTTTTAATCGAATGTTGTGATG
gcctgac putative branch site (score: 2)
aatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taactgtcatttgatgcaattccttgccgagtgcacaagtaatattcgcctgacgtatgagaacttatgactattcggacacatatgcaatgaaatgcagAGTCTAAGTCACTCGTCTGCAAATGTTGGTGATTTGGTAAGTGCAAGAGCTAAGCATGCTGTGGACGATAATGCGGAAGTTTTAATCGAATGTTGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - -tgatgca
- - - - - - - - - - - - - - - gtgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc