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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC

Basic information

species Physcomitrella patens
transcript PP1S184_111V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os05g49030.1 (Oryza sativa), 3'ss of exon 3
-----agtgggc--gttaaggatat-gtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
       | |||  | ||||  | | ||| ||  | | | || ||||||| |         || ||| |  || |   |   ||   ||   |      | ||  |||||||| |||    | || || || |||||||||||||| || ||| |||| ||||||||| |||| || |||||||||||||||||||||||||||||  
gaaaagattggcttgctaagagtctagtgtgatactacatatcttggagttga--------atagttaaaacagtgcaacccttctaaacattctgattgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGTTACCAGAGCAGAACAGGTTACCACAACATGTACAAGGAATACCGTGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g47660.1 (Oryza sativa), 3'ss of exon 3
--agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
    ||  |  || |   |      | | |    ||  |        ||  | ||    |    |    |||  |       |   ||  ||| |||| ||||||||||||    | ||||| || ||||||||||| || || ||| |||| ||||||||| ||||||| |||||||||||||||||||| ||||||||  
tttttgaacacta-gatcacactttacttctagtatgatttcacatttttgcatggatataatactttcttctctacccctcacaatttctgc-catgtcagATCTTCGAGCGCAACCCAACCACGATCAAGAACTATGGCATCTGGCTGCGTTACCAGAGCAGAACCGGTTACCACAACATGTACAAGGAGTACCGTGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: LOC_Os01g54870.1 (Oryza sativa), 3'ss of exon 3
-agtgggcgttaa---ggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
 |    |  ||||   || |  ||  |    |    | |||    || | |   |  || ||||| |  ||   | | ||  |  |  |||||     ||| |||| || |||||| | ||||| || ||||||||||| || || ||| |||| ||||||||  | || ||||||||||||||||||||||| ||||||||| 
cacaatgatttaaattggctgagttagttcacgcttagtttattatcagctttttcaatagtttacctgat---aatatttccttttgttgttttatctgc-agATTTTTGAGAAGAACCCAACAACTATCAAGAACTATGGCATCTGGCTGCGTTACCAGAGTAGGACTGGCTACCACAACATGTACAAGGAGTACCGTGATA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 3
--agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttg-acaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
  |   | | |          | |   |  |  | |||| |      ||  |   | |  | ||     ||| |    | ||||    |||      |  |||||||| |||    | || || || |||||||||||||| || ||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||  
atacctgacctctgcctgtcatagttctgtaccgttttttgttctcatttgc---aagaatcatttgtgttcttatccgtacaagttctgtatgctgtatcagATCTTTGAGCGTAACCCGACGACAATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: AC230013.2_FGT007 (Zea mays), 3'ss of exon 3
-agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
   ||   | |   |||   | |   |          |    |   |  |    ||  ||| |    | |||||    | | | | |||      || ||||||||||||    | || || || |||||||||||||| || ||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||  
agatgaatgatggcgatcccttgtccttgcagctgaatcttattactcgaaagaatcctttgtgttgtgtcatttgctaaagt-cctgtatgatgtggcagATCTTCGAGCGTAACCCGACGACGATCAAGAACTACGGCATCTGGCTGCGCTACCAGAGCAGAACCGGCTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
---agtgggcgttaaggata-tgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
   || |   ||  |||||    | | |||||  |  |       ||   | | ||     ||| ||||  |    |  | |    ||||| ||    |  ||||||||||||    | ||||| ||||||||||||||||| || ||| |||||||||||||| | || || |||||||||||||||||||| ||||| ||  
gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagtt--ctatttgtccacctctgctccttaactggcttgatgtttct--cagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G113720_T02 (Zea mays), 3'ss of exon 2
agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttg-cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
 | ||  |     |  ||     | ||    | |     ||  | ||   ||        ||| | ||      || | ||  | | | |  |  |  |||||||| |||    | || || |||||||||||||| || || ||| |||| ||||||||| | || || |||||||||||||||||||| ||||| ||  
-gaggatgggcttgcaatcccaaagtcacttgttcacttagatgttttgtttttctccacatctacttctgagcttcataacacatttcgatgtttctcagATCTTTGAGCGCAACCCGACCACCATCAAGAACTATGGCATCTGGCTGCGCTACCAGAGCAGGACTGGTTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA15G10220.1 (Glycine max), 3'ss of exon 3
agtgggcgttaaggatatgtgggaatccag---agattttggagtcggttcacttgatggtttatc-caatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
    ||  ||  |||| | |   ||  |||     | |     ||  |||  || | ||| | ||      | |  ||||        || ||     | |||||| || |||||| | ||||| |  || |||||||| ||||||||| ||||||| |||||  | || || |||||||||||||||||||| ||||||||  
--ctggatttgcggat-tatttcaactcagtttgaaatacaatgttagttttct-gttggctaattgtgggtgctctgttctgttgaattattttattttccagATTTTTGAGAAGAACCCAACCAAAATTAAGAACTATGGTATATGGTTGCGGTATCAGAGTAGGACTGGTTACCACAACATGTACAAGGAGTACCGTGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GLYMA18G13270.1 (Glycine max), 3'ss of exon 3
-agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttg-acaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC-
 ||  |    |   ||    |     |||   | |||| |  || |  || |  | | |  |        || || || | ||| |||  |||  ||   |||| || |||||  |||| || |  |||||||| || || || ||| |||| || ||||||||||| || || |||||||||||||||||||| || |||  
taggagtacctggagacg-atttttttcccctgtttttagcttcag--cattctaggctccaattgcagacagtgatgtataattctttatgcttattgtagaTTTTTGAGAAAAATCCTACCAAGATCAAGAATTATGGAATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATATCGCGATAC

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv10s0003g03130.t01 (Vitis vinifera), 3'ss of exon 3
agtgggcgttaaggatatgtgggaatccagag-attttggagtcggttcacttg---atggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
       || |||  | | |   |||     | |||      || | | |       |||   |||      ||||| |    |     |      |    ||||| || |||||| | ||||| || ||||||||||| || || ||| ||||||| || || ||||| || || ||||||||||||||||||||||||||  
----aatgtcaagcttgtattttaatatgttgtattgcaccttctgattaaaaaaaaatgtcgtatttcccctcattatgtttagctactacatgtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGGTATCAAAGTCGAACTGGTTATCACAACATGTACAAGGAATACCGTGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv10s0003g03150.t01 (Vitis vinifera), 3'ss of exon 3
-----agtgggcgttaaggatatgtgg-gaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
       |   | | ||     |||   |   |    |||| |  ||  ||   |     ||  ||  ||    | ||  ||  |  ||| |||    ||   ||||| || |||||| | ||||| || |||||||| || || || ||| ||||||| || || ||||| || || ||||||||||||||||||||||||||  
tcaagcttctacttcaatatgctgtattggcccttctgattgtaaagggggaaaaaactttgtattgcccttcattatgtttagc--tgcatgt----cactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGGTATCAAAGTCGAACTGGTTATCACAACATGTACAAGGAATACCGTGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv19s0135g00100.t01 (Vitis vinifera), 3'ss of exon 3
agtgggcgttaaggat-atgtgggaatccagagattttgg--agtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
  ||    || || |  |  |   || ||| |  | ||    |   |  |   |   |   || |  | |||  || |    | |  || |     |   ||||| || |||||| |||| || |  || || ||||| || || ||| |||| || ||||||||||| || || |||||||||||||||||||| || ||  
--tgtctttttagaaccagatcttaagccatatctcttacctaaatgtctttttccttaacttttttattttttttttctg-agtaattctcattaactgcagATTTTTGAGAAGAATCCCACCAAGATAAAAAACTATGGAATTTGGTTGCGATATCAGAGCCGAACTGGATATCACAACATGTACAAGGAATATCGGGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ38689 (Selaginella moellendorffii), 3'ss of exon 3
agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatcc--aatttcattgttgacaatgcttg--ttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
                                    |  |||   |||  ||  |   || ||   |   | |    ||| ||   | |   | ||     ||||| ||||||||| | || || || ||||||||||| || || |||||| ||||||||||||| || || |||||||||||||||||||| ||||| ||  
-----------------------------------gtaaagttctttctttttctttcttttctcgagccttacaagtgagaactttggaacttcgtgacacagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EFJ31458 (Selaginella moellendorffii), 3'ss of exon 3
agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttg--ttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
                            | || | ||    |   ||   ||  | | |  || |   | |    ||| ||   | |   | ||     ||||| ||||||||| | || || || ||||||||||| || || |||||| ||||||||||||| || || |||||||||||||||||||| ||||| ||  
--------------------------gtaaagttctttctttttctttctttcctcgatgctctagccttacaagtgagaactttggaacttcgtgacacagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162224696|gb|FC401944.1|FC401944
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67697394|gb|BJ957627.1|BJ957627
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15261745|gb|BI437055.1|BI437055
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162266001|gb|FC443394.1|FC443394
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15730147|gb|BI741698.1|BI741698
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162208118|gb|FC384573.1|FC384573
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15728900|gb|BI741035.1|BI741035
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|19790852|gb|BQ042089.1|BQ042089
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15730159|gb|BI741705.1|BI741705
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|161970208|gb|EE296212.1|EE296212
EST:     ATTGCAAAAGGTCAAGTAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: ATTGCAAAAGGTCAAG-AAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15729272|gb|BI741231.1|BI741231
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162273888|gb|FC450027.1|FC450027
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67703295|gb|BJ963528.1|BJ963528
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162267613|gb|FC443395.1|FC443395
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162217376|gb|FC392844.1|FC392844
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|19783856|gb|BQ040081.1|BQ040081
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67720980|gb|BJ971239.1|BJ971239
EST:     TGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: TGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162261334|gb|FC437767.1|FC437767
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|18328473|gb|BJ160478.1|BJ160478
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162218715|gb|FC394265.1|FC394265
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162252640|gb|FC428671.1|FC428671
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162262546|gb|FC439745.1|FC439745
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15728980|gb|BI741076.1|BI741076
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67728138|gb|BJ978397.1|BJ978397
EST:     AATTGCAAAAGGTCAAGAAGGTTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67700094|gb|BJ960327.1|BJ960327
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67576562|gb|BJ949386.1|BJ949386
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162238901|gb|FC415091.1|FC415091
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|7584280|gb|AW700176.1|AW700176
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162208119|gb|FC384574.1|FC384574
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|6102500|gb|AW126970.1|AW126970
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTG
EST: gi|162245564|gb|FC423286.1|FC423286
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162269520|gb|FC445076.1|FC445076
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|208354954|gb|DC914218.1|DC914218
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|7583001|gb|AW699165.1|AW699165
EST:     GCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: GCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162245565|gb|FC423287.1|FC423287
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67574005|gb|BJ946829.1|BJ946829
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15729249|gb|BI741219.1|BI741219
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|18336702|gb|BJ168725.1|BJ168725
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162265925|gb|FC442928.1|FC442928
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67720373|gb|BJ970632.1|BJ970632
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|37848514|gb|BJ606522.1|BJ606522
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15727849|gb|BI740494.1|BI740494
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67702479|gb|BJ962712.1|BJ962712
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|18367954|gb|BJ200038.1|BJ200038
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|7693560|gb|AW761666.1|AW761666
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67724821|gb|BJ975080.1|BJ975080
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67719874|gb|BJ970133.1|BJ970133
EST:     AATTGCAAAAGGTCAAGAAGGTTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|7286307|gb|AW598794.1|AW598794
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162207337|gb|FC383894.1|FC383894
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|15729857|gb|BI741522.1|BI741522
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162207338|gb|FC383895.1|FC383895
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|7647896|gb|AW738886.1|AW738886
EST:     GGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: GGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67716306|gb|BJ966566.1|BJ966566
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|18372400|gb|BJ204002.1|BJ204002
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162240131|gb|FC418258.1|FC418258
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|67701885|gb|BJ962118.1|BJ962118
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162218716|gb|FC394266.1|FC394266
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|162262545|gb|FC439744.1|FC439744
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|37821368|gb|BJ579434.1|BJ579434
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|208382431|gb|DC927965.1|DC927965
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
EST: gi|100360736|gb|BY965874.1|BY965874
EST:     AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAG                         ATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG
genomic: AATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 43

GTACTTCTTGAGGAAATTGCAAAAGGTCAAGAAGGCTCACGGGCAACTTCTAGCAATCAATGAGgtttggacca ... cgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC
                           tgttgac  putative branch site (score: 43)
                   aatttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtgggcgttaaggatatgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA