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gtgaagtgttgctttgatttaatctcttttattcctgatgttttgacttgaagcttgagctttctatagaaccagggcgttataagttaaccattttatagcagtttgaattttccttggagccgtgcttagcattggagaatttgtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAT
species | Physcomitrella patens |
transcript | PP1S180_67V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGG ATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAEST: gi|208365735|gb|DC944163.1|DC944163
genomic: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCA
EST: TTGCATGGACCCAATCAGTATCCTTCCCNGG ATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAEST: gi|162220966|gb|FC396151.1|FC396151
genomic: TTGCATGGACCCAATCAGTATCCTTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCA
EST: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGG ATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAEST: gi|208364966|gb|DC947108.1|DC947108
genomic: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCA
EST: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGG ATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAEST: gi|100417046|gb|BY993217.1|BY993217
genomic: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCA
EST: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGG ATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAEST: gi|18345513|gb|BJ177556.1|BJ177556
genomic: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCA
EST: CCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCCTTCCCCGG ATGTGCTACCAGGATGGCAGGAEST: gi|37821493|gb|BJ579559.1|BJ579559
genomic: CCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCC-TTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGA
EST: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGG ATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAEST: gi|18342360|gb|BJ174395.1|BJ174395
genomic: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCA
EST: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGG ATGTGCTACCAGGATGGCAGGA
genomic: TCCACGTTCAAGGAAGCCTTTGCATGGACCCAATCAGTATCCTTCCCCGGgtgaagtgtt ... gtggatgcagATGTGCTACCAGGATGGCAGGA
gcagtttgaattttccttggagccgtgcttagcattggagaatttgtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAT
ttgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagtgttgctttgatttaatctcttttattcctgatgttttgacttgaagcttgagctttctatagaaccagggcgttataagttaaccattttatagcagtttgaattttccttggagccgtgcttagcattggagaatttgtggatgcagATGTGCTACCAGGATGGCAGGAGACCATGGATCATTATCATAGCGAACTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA