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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattacagaattcgtagagttcttcattagctcatttctttttacgattgcaagacatagaaatctatatgaacgacttcttggtgcccattgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTCATTGCGGCTGCCAAAGGTTACAAGCTTATCCTTACCATGCCTGCATCCA

Basic information

species Physcomitrella patens
transcript PP1S17_59V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100391135|gb|BY953145.1|BY953145
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCNACCAGTGGGAACACCGGTATTGGTTTGGCTT-C
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100439745|gb|BY962086.1|BY962086
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|208379092|gb|DC911617.1|DC911617
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162268501|gb|FC444374.1|FC444374
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162194984|gb|FC369049.1|FC369049
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100444286|gb|BY982315.1|BY982315
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAGAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|208351545|gb|DC909989.1|DC909989
EST:     TTANCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|208399641|gb|DC908822.1|DC908822
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100435912|gb|BY979286.1|BY979286
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTG
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTG
EST: gi|162263268|gb|FC438556.1|FC438556
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100411847|gb|BY992370.1|BY992370
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18368404|gb|BJ200489.1|BJ200489
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100389151|gb|BY952355.1|BY952355
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100450543|gb|CJ974316.1|CJ974316
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18331590|gb|BJ163601.1|BJ163601
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAA
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAA
EST: gi|100441367|gb|BY962656.1|BY962656
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100388867|gb|BY988743.1|BY988743
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100364327|gb|BY984557.1|BY984557
EST:     TAGCATGATTACTGATGCGGAGAATAAGGGGGCAATTACTCCCCGGAAAG                         AGCATTCTTGTTTGAAGCCAACCAGTTGGGAAACACCGGGTATTGGGTTT
genomic: TAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCC-GGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTT-GA-GCCAACCAGT-GGGAA-CACCGG-TATTGG-TTT
EST: gi|100364020|gb|BY966286.1|BY966286
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|67574856|gb|BJ947680.1|BJ947680
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100377797|gb|BY986401.1|BY986401
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAGAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18347503|gb|BJ179549.1|BJ179549
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|67574414|gb|BJ947238.1|BJ947238
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|22492370|gb|BU052293.1|BU052293
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162237881|gb|FC412508.1|FC412508
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100448095|gb|CJ972394.1|CJ972394
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162216431|gb|FC393264.1|FC393264
EST:     ATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: ATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|67577782|gb|BJ949949.1|BJ949949
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100362532|gb|BY947401.1|BY947401
EST:     TAGCATGATTACTGATGCGGAGAATAAGGGTGCAAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGAATTGGTTTGTCTTTT
genomic: TAGCATGATTACTGATGCGGAGAATAAGGGTGCAA-TTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTT-
EST: gi|100365388|gb|BY966573.1|BY966573
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100364747|gb|BY947888.1|BY947888
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100442961|gb|BY963456.1|BY963456
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162171169|gb|FC347783.1|FC347783
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100377280|gb|BY968449.1|BY968449
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100417127|gb|BY957181.1|BY957181
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162150189|gb|FC326066.1|FC326066
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|208375523|gb|DC940521.1|DC940521
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100363746|gb|BY966540.1|BY966540
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGGCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|208379480|gb|DC911091.1|DC911091
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|208349136|gb|DC902170.1|DC902170
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162154236|gb|FC330367.1|FC330367
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100352878|gb|BY945495.1|BY945495
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162164732|gb|FC340779.1|FC340779
EST:     GTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: GTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18372256|gb|BJ203858.1|BJ203858
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|67719719|gb|BJ969978.1|BJ969978
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18344603|gb|BJ176644.1|BJ176644
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACA
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACA
EST: gi|100359503|gb|BY947020.1|BY947020
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100357205|gb|BY983746.1|BY983746
EST:     TCGGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTT
genomic: TAG-CATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTT-GTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTT
EST: gi|100352459|gb|BY983219.1|BY983219
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|162277367|gb|FC453173.1|FC453173
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100447018|gb|CJ971317.1|CJ971317
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18343102|gb|BJ175140.1|BJ175140
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100410588|gb|BY992174.1|BY992174
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18375390|gb|BJ206968.1|BJ206968
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAG
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAG
EST: gi|67719948|gb|BJ970207.1|BJ970207
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18331703|gb|BJ163714.1|BJ163714
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGA
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGA
EST: gi|100378820|gb|BY968705.1|BY968705
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18367034|gb|BJ199114.1|BJ199114
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGG
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGG
EST: gi|100392796|gb|BY971888.1|BY971888
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18342527|gb|BJ174562.1|BJ174562
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGG
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGG
EST: gi|100415638|gb|BY992932.1|BY992932
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|67709543|gb|BJ965359.1|BJ965359
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|18356110|gb|BJ188169.1|BJ188169
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100438593|gb|BY980035.1|BY980035
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCCAGTGG-AACACCGGTATTGGTTTGGCTTT
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACC-AGTGGGAACACCGGTATTGGTTTGGCTTT
EST: gi|162273732|gb|FC449455.1|FC449455
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100419486|gb|BY957596.1|BY957596
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATGGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|100361661|gb|BY984281.1|BY984281
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
EST: gi|67719929|gb|BJ970188.1|BJ970188
EST:     TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAG                         AGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC
genomic: TTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 24

GATTGGTTTTAGCATGATTACTGATGCGGAGAATAAGGGTGCAATTACTCCCGGAAAGgtttgcaccc ... ttgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTCATTGCGGCTGCCAAAGGTTACAAGCTTATCCTTACCATGCCTGCATCCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgcaagacatagaaatctatatgaacgacttcttggtgcccattgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTCATTGCGGCTGCCAAAGGTTACAAGCTTATCCTTACCATGCCTGCATCCA
           atagaaatctatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattacagaattcgtagagttcttcattagctcatttctttttacgattgcaagacatagaaatctatatgaacgacttcttggtgcccattgtgaacagAGCATTCTTGTTGAGCCAACCAGTGGGAACACCGGTATTGGTTTGGCTTTCATTGCGGCTGCCAAAGGTTACAAGCTTATCCTTACCATGCCTGCATCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT