1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttctcgggctgttcttcaggtatcacttctgaagctttggtcacagatgcttgatgtctacatgtgggatggtggtggtatatgttttttttgattcagGTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAAGAGCAATGTGAAGCCATCATCAAGCTTGCGAGGACACGTCTTGCTCCTT
species | Physcomitrella patens |
transcript | PP1S172_91V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAG GTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAAEST: gi|100402089|gb|BY973211.1|BY973211
genomic: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAGgtattttaca ... tttgattcagGTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAA
EST: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAG GTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAAEST: gi|162149918|gb|FC326241.1|FC326241
genomic: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAGgtattttaca ... tttgattcagGTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAA
EST: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAG GTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAAEST: gi|100372203|gb|BY985484.1|BY985484
genomic: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAGgtattttaca ... tttgattcagGTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAA
EST: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAG GTGTTAAGTTGGGAAAC-ACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAEST: gi|100384950|gb|BY969685.1|BY969685
genomic: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAGgtattttaca ... tttgattcagGTGTTAAGTTGG-AAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAA
EST: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTTCAG GGGTTAAGT-GGNAAACCACGTGCCCTTTTTGTATCCCGA-TTTTGGCA-G
genomic: TCGAACATGGCCGTACTGGAGACAGTTCTGTTACTGACATTCCTTTCCAGgtattttaca ... tttgattcagGTGTTAAGTTGG-AAACCACGTGCCCTTTT-GTATCC-GAATTTTG-CAAG
agatgcttgatgtctacatgtgggatggtggtggtatatgttttttttgattcagGTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAAGAGCAATGTGAAGCCATCATCAAGCTTGCGAGGACACGTCTTGCTCCTT
ttttgat putative branch site (score: 4)
tgtttttttt CT-rich tract
tatatgttttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctcgggctgttcttcaggtatcacttctgaagctttggtcacagatgcttgatgtctacatgtgggatggtggtggtatatgttttttttgattcagGTGTTAAGTTGGAAACCACGTGCCCTTTTGTATCCGAATTTTGCAAGCAAAGAGCAATGTGAAGCCATCATCAAGCTTGCGAGGACACGTCTTGCTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - cagatgc