1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgactgtactgttagaccacctttcacaatctttatttttatttttattttcatttgatacattctgaagagataaagtgttggctgccaatccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
species | Physcomitrella patens |
transcript | PP1S16_326V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTGGACATCCAACTGCCAT CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTGEST: gi|208392176|gb|DC949580.1|DC949580
genomic: CGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
EST: TGGGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCAT CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTGEST: gi|208374828|gb|DC956101.1|DC956101
genomic: TGGGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
EST: GGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCAT CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTGEST: gi|67726239|gb|BJ976498.1|BJ976498
genomic: GGACTCCTTACGAAGGTGGTGTCTTCATCGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
EST: CTTCATCGTGGACATCCAACTGCCAT CTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
genomic: CTTCATCGTGGACATCCAACTGCCATgtgagtatca ... atccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
tattttcatttgatacattctgaagagataaagtgttggctgccaatccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
atttgat putative branch site (score: 6)
atttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactgtactgttagaccacctttcacaatctttatttttatttttattttcatttgatacattctgaagagataaagtgttggctgccaatccaaacagCTGCTTATCCTTTTGAGCCACCGAAGATGCAGTTCGTGACCAAAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG