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gtgagagttctaattctctgaagatatacctgaattatgagactggggtaaaaccatctgttcagaccttcaaatggtgatttgcttcttattcagtcgttctccttaagtgcagGAAGTTGGTATTTCTTCTCCAAGTTCGGACTTAAGAACCTGCCTATTCGAGATATCCTAG
species | Physcomitrella patens |
transcript | PP1S169_48V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTTTTGGAGTTATAGGAGTCTTTATTTCTTTCGGAATTATCTCAACAG GAAGTTGGTATTTCTTCTCCAAGTTCGGACTTAAGAACCTGCCTATTCGAGEST: gi|162255349|gb|FC432075.1|FC432075
genomic: GTTTTTTGGAGTTATAGGAGTCTTTATTTCTTTCGGAATTATCTCAACAGgtgagagttc ... ttaagtgcagGAAGTTGGTATTTCTTCTCCAAGTTCGGACTTAAGAACCTGCCTATTCGAG
EST: GTTTTTTGGAGTTATAGGAGTCTTTATTTCTTTCGGAATTATCTCAACAG GAAGTTGGTATTTCTTCTCCAAGTTCGGACTTAAGAACCTGCCTATTCGAGEST: gi|18366347|gb|BJ198426.1|BJ198426
genomic: GTTTTTTGGAGTTATAGGAGTCTTTATTTCTTTCGGAATTATCTCAACAGgtgagagttc ... ttaagtgcagGAAGTTGGTATTTCTTCTCCAAGTTCGGACTTAAGAACCTGCCTATTCGAG
EST: GTTTTTTGGAGTTATAGGAGTCTTTATTTCTTTCGGAATTATCTCAACAG GAAGTTGGTATTTCTTCTC
genomic: GTTTTTTGGAGTTATAGGAGTCTTTATTTCTTTCGGAATTATCTCAACAGgtgagagttc ... ttaagtgcagGAAGTTGGTATTTCTTCTC
ttcagaccttcaaatggtgatttgcttcttattcagtcgttctccttaagtgcagGAAGTTGGTATTTCTTCTCCAAGTTCGGACTTAAGAACCTGCCTATTCGAGATATCCTAG
tcgttctcctt CT-rich tract
ttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagttctaattctctgaagatatacctgaattatgagactggggtaaaaccatctgttcagaccttcaaatggtgatttgcttcttattcagtcgttctccttaagtgcagGAAGTTGGTATTTCTTCTCCAAGTTCGGACTTAAGAACCTGCCTATTCGAGATATCCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC