Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagcttcgcacttcaagatagttccactctaaaaagatttttttaaaaaggtaagaatgcttgaattgggcgggtgactgtattagcatgcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATTGTGGATTCCACCAACATGAAGTGTCTCACTCCACC

Basic information

species Physcomitrella patens
transcript PP1S168_28V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162168142|gb|FC343832.1|FC343832
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|37847066|gb|BJ605074.1|BJ605074
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCNCCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|37837708|gb|BJ595716.1|BJ595716
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|37850559|gb|BJ608567.1|BJ608567
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|162174369|gb|FC350440.1|FC350440
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|37842166|gb|BJ600174.1|BJ600174
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|37827266|gb|BJ585278.1|BJ585278
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|18338077|gb|BJ170101.1|BJ170101
EST:     CTGATGTTGCATTTNGCAACATGTGGGCTGAGTNTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|37845300|gb|BJ603308.1|BJ603308
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|37827044|gb|BJ585056.1|BJ585056
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
EST: gi|162167676|gb|FC343990.1|FC343990
EST:     CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAG                         GTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT
genomic: CTGATGTTGCATTTCGCAACATGTGGGCTGAGTTTGAGTGGGAAAACAAGgtatctatcg ... gcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaggtaagaatgcttgaattgggcgggtgactgtattagcatgcttttccagGTAGCAATAAATACCACCATTCAAGACGTTCGGGAGTTCTTGCAGCATATTGTGGATTCCACCAACATGAAGTGTCTCACTCCACC
                                            tgcttttcc  CT-rich tract
       taagaat  TA-rich tract