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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggctcttttccttccccctcttgtcttgatctgtagttgccattcatgttttagcggttggcagcgactgttttgtttttgagctatattttgattttgtataattttcgtatatgcagTGGAACTGTTCGCTATGCGAGTATGCATGCACATATGGAAAGGACTAGGAGTAGGAAGGACGACTTGGGATCACTGGCTTATACTTTGGTATTCCTTATG

Basic information

species Physcomitrella patens
transcript PP1S1655_2V6.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgactgttttgtttttgagctatattttgattttgtataattttcgtatatgcagTGGAACTGTTCGCTATGCGAGTATGCATGCACATATGGAAAGGACTAGGAGTAGGAAGGACGACTTGGGATCACTGGCTTATACTTTGGTATTCCTTATG
                        ttttgat  putative branch site (score: 4)
                                        ttttcgt  putative PPT
                    tatattttgattttgt  TA-rich tract