1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggtgcttggatgtttttgactgcattgtcgaaattatacttaagtcgtctaagacgacgaagacgtgtaaaagattataattaaaatcttcgttcagtagtttcaatctcaggtgctaatactgatgagtgtgccttgggcagGGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATATCTCCCTACAGGAAAGGGTGGATGTACAGACAGGGATAAAAATGATCCT
species | Physcomitrella patens |
transcript | PP1S15_44V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTGACTTTGGAGAAGCAGCCATTGGTCGCGTGGCGCCTGTTGATTCTG GGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATAEST: gi|162195528|gb|FC371829.1|FC371829
genomic: TCCTGACTTTGGAGAAGCAGCCATTGGTCGCGTGGCGCCTGTTGATTCTGgtaggtgctt ... ccttgggcagGGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATA
EST: TCCTGACTTTGGAGAAGCAGCCATTGGTCGCGTGGCGCCTGTTGATTCTG GGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATAEST: gi|162194283|gb|FC368505.1|FC368505
genomic: TCCTGACTTTGGAGAAGCAGCCATTGGTCGCGTGGCGCCTGTTGATTCTGgtaggtgctt ... ccttgggcagGGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATA
EST: TCCTGACTTTGGAGAAGCAGCCATTGGTCGCGTGGCGCCTGTTGATTCTG GGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATA
genomic: TCCTGACTTTGGAGAAGCAGCCATTGGTCGCGTGGCGCCTGTTGATTCTGgtaggtgctt ... ccttgggcagGGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATA
ttcgttcagtagtttcaatctcaggtgctaatactgatgagtgtgccttgggcagGGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATATCTCCCTACAGGAAAGGGTGGATGTACAGACAGGGATAAAAATGATCCT
tactgat putative branch site (score: 10)
tttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgcttggatgtttttgactgcattgtcgaaattatacttaagtcgtctaagacgacgaagacgtgtaaaagattataattaaaatcttcgttcagtagtttcaatctcaggtgctaatactgatgagtgtgccttgggcagGGCTTTGGTGGATCATTCTGTTGCGAGCATATGGTAAGTGTACAGGCGATATCTCCCTACAGGAAAGGGTGGATGTACAGACAGGGATAAAAATGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA