1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atccgaggtgaattttctccctcgaatgtacaaaggaagagctctgtgagtccctacctctgacagcttgttcaccaaatttcttgcttctttgatacagATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATTCACAACAAGAACTACACAAGGGAGGTCAAGATCTCCATATTTATAGTTA
species | Physcomitrella patens |
transcript | PP1S15_388V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGTTCTATGAACCTGAGTCTTATGCTAAATTCTGTCGGCTTCTACCAG ATCGCNTAA-TTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATEST: gi|100398934|gb|BY990589.1|BY990589
genomic: TTGTTTCTATGAACCTGAGTCTTATGCTAAATTCTGTCGGCTTCTACCAGgtatttggat ... tttgatacagATCGC-TAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAAT
EST: TGTTTCTATGAACCTGAGTCTTATGCNTAA-TTCTGTCGGCTTCTACCAG ATCGCTNAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATTEST: gi|18346553|gb|BJ178598.1|BJ178598
genomic: TGTTTCTATGAACCTGAGTCTTATGC-TAAATTCTGTCGGCTTCTACCAGgtatttggat ... tttgatacagATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATT
EST: TTGTTTCTATGAACCTGAGTCTTATGCTAAATTCTGTCGGCTTCTACCAG ATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATTEST: gi|162262231|gb|FC437142.1|FC437142
genomic: TTGTTTCTATGAACCTGAGTCTTATGCTAAATTCTGTCGGCTTCTACCAGgtatttggat ... tttgatacagATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATT
EST: TTGTTTCTATGAACCTGAGTCTTATGCTAAATTCTGTCGGCTTCTACCAG ATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATT
genomic: TTGTTTCTATGAACCTGAGTCTTATGCTAAATTCTGTCGGCTTCTACCAGgtatttggat ... tttgatacagATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATT
gtgagtccctacctctgacagcttgttcaccaaatttcttgcttctttgatacagATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATTCACAACAAGAACTACACAAGGGAGGTCAAGATCTCCATATTTATAGTTA
tttcttgcttcttt CT-rich tract
aaatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccgaggtgaattttctccctcgaatgtacaaaggaagagctctgtgagtccctacctctgacagcttgttcaccaaatttcttgcttctttgatacagATCGCTAAATTGAGTATGATACCCACTGTGAGCATTCTAGAGTGGATAATTCACAACAAGAACTACACAAGGGAGGTCAAGATCTCCATATTTATAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC