Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatacttccggtctcttaaggttttatatggtagaggagtacagtgaaatcgttttagttgtggttaggtacggcattgacttatacaagtctgtggcagGTAATCATTGTAACAAGTTCTTTAATGAAGGACATGAACAGCAAGACAGACCTCTATCGCGCGAATGCCATAAGGGTGCTGTGCAGAATCACGGACGGTG

Basic information

species Physcomitrella patens
transcript PP1S15_298V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S15_298V6.2 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G178618_T01 (Zea mays), 3'ss of exon 4
aatacttccggtctcttaaggttttatatggtagaggagtacagtgaaatcgttttagttgtggttaggtacggcattgacttat-acaagtctgtggcagGTAATCATTGTAACAAGTTCTTTAATGAAGGACATGAACAGCAAGACAGACCTCTATCGCGCGAATGCCATAAGGGTGCTGTGCAGAATCACGGACGGTG
         |||  ||   |||||  ||   |   |  ||   |  ||||  | |    |||||      | | | || | || | |   ||  |  | |||| ||||| |||||||| ||||| |||||||||||||| ||||| || ||  | || || || ||||| || || || || ||  | || |  |||    
------gttggtgactattggtttc-tactat---gtggtttggc-aaataatgtggaatgtgg----aaatgactttcatttgtgatctgttgggtgtagGTCATCATAGTAACAAGCTCTTTGATGAAGGACATGAATAGCAAAACTGATATGTACCGTGCAAATGCTATTAGAGTTCTTTGTCGTATTATTGACTCAA

upper sequence: PP1S15_298V6.2 (Physcomitrella patens), 3'ss of exon 3
lower sequence: GRMZM2G036034_T01 (Zea mays), 3'ss of exon 4
aatacttccggtctcttaaggttttatatggtagaggagtacagtgaaatcgttttagttgtggttaggtacggcattgacttat-acaagtctgtggcagGTAATCATTGTAACAAGTTCTTTAATGAAGGACATGAACAGCAAGACAGACCTCTATCGCGCGAATGCCATAAGGGTGCTGTGCAGAATCACGGACGGTG
          ||   | ||  ||   |        |  || | |  ||||  | |    |||||    | | | | |  | || | |    |  |  | |||| ||||| |||||||| ||||| |||||||||||||| ||||| || ||  | || || || || || || || || || ||  | || |  |||    
----------gttggtgaacattggttgctactatgtggttcggc-aaataatgtggaatgtgg----ggatgacttccatttgtgatctattgggtgtagGTCATCATAGTAACAAGCTCTTTGATGAAGGACATGAATAGCAAAACCGATATGTACCGTGCAAACGCTATTAGAGTTCTTTGTCGTATTATCGACTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatcgttttagttgtggttaggtacggcattgacttatacaagtctgtggcagGTAATCATTGTAACAAGTTCTTTAATGAAGGACATGAACAGCAAGACAGACCTCTATCGCGCGAATGCCATAAGGGTGCTGTGCAGAATCACGGACGGTG
                             cattgac  putative branch site (score: 3)
       ttttagtt  TA-rich tract