1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagctcgtcttggcaggcgaacgaccttaacactttgtgattccttcacgatttttattacgtatgggtcttgaccaagccacatgtggactacgggaatgatatgttttggttttggtgaatagGTATCTGGTGACGACCTTTTCTGTTGTTCCAAGGGGAACGGAAGGAGCAATCAGCTTAGAAGGGACAATTGCTGGCTTGATAGCCTCAGTTATATTAGCA
species | Physcomitrella patens |
transcript | PP1S158_146V6.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTAGTGACACCATCTCCAGCGAGATCGGCAAGGCTTACGGAAAAACCAC GTATCTGGTGACGACCTTTTCTGTTGTTCCAAGGGGAACGGAAGGAGCAATEST: gi|100372845|gb|BY948729.1|BY948729
genomic: CTTAGTGACACCATCTCCAGCGAGATCGGCAAGGCTTACGGAAAAACCACgtgagctcgt ... tggtgaatagGTATCTGGTGACGACCTTTTCTGTTGTTCCAAGGGGAACGGAAGGAGCAAT
EST: CTTAGTGACACCATCTCCAGCGAGATCGGCAAGGCTTACGGAAAAACCAC GTATCTGGTGACGACCTTTTEST: gi|67693140|gb|BJ953373.1|BJ953373
genomic: CTTAGTGACACCATCTCCAGCGAGATCGGCAAGGCTTACGGAAAAACCACgtgagctcgt ... tggtgaatagGTATCTGGTGACGACCTTTT
EST: CTTAGTGACACCATCTCCAGCGAGATCGGCAAGGCTTACGGAAAAACCAC GTATCTGGTGACGACCTTTTCTGTTGTTCCAAGGGGAACGGAAGGAGCAATEST: gi|100445814|gb|CJ970113.1|CJ970113
genomic: CTTAGTGACACCATCTCCAGCGAGATCGGCAAGGCTTACGGAAAAACCACgtgagctcgt ... tggtgaatagGTATCTGGTGACGACCTTTTCTGTTGTTCCAAGGGGAACGGAAGGAGCAAT
EST: CTTANTGACACCATCTCCAGCGAGATCGGCAAGGCTAACGNAAAA-CNAC GTATCTGGTGACGAC-TTTT
genomic: CTTAGTGACACCATCTCCAGCGAGATCGGCAAGGCTTACGGAAAAACCACgtgagctcgt ... tggtgaatagGTATCTGGTGACGACCTTTT
ttgaccaagccacatgtggactacgggaatgatatgttttggttttggtgaatagGTATCTGGTGACGACCTTTTCTGTTGTTCCAAGGGGAACGGAAGGAGCAATCAGCTTAGAAGGGACAATTGCTGGCTTGATAGCCTCAGTTATATTAGCA
tcttgac putative branch site (score: 3)
atatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcgtcttggcaggcgaacgaccttaacactttgtgattccttcacgatttttattacgtatgggtcttgaccaagccacatgtggactacgggaatgatatgttttggttttggtgaatagGTATCTGGTGACGACCTTTTCTGTTGTTCCAAGGGGAACGGAAGGAGCAATCAGCTTAGAAGGGACAATTGCTGGCTTGATAGCCTCAGTTATATTAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT